Detailed information of FUN_015661-T1 in Siderastrea siderea

Genomic Location: contig_12:13359102...13367692
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF10351
all species →		FMP27-BLTP2_CBLTP2/FMP27/Hobbit, C-terminalRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR019443
all species →		DomainBLTP2/FMP27/Hobbit, C-terminalInterproscan
IPR045167
all species →		FamilyHobbitInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR15678
all species →		ANTIGEN MLAA-22-RELATEDInterproscan

 Gene Ontology
No Gene Ontology signature was detected for FUN_015661-T1. This gene does have a gene model — the search simply returned no hit.
Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K09272SSRP1, POB3; FACT complex subunit SSRP1/POB3-Chromosome and associated proteinsko03036deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_015661-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
54TPM > 0
7Conditions
836.1Max TPM
173.5Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 16 258.37 581.25
holobiont · low.pH Control.temp 20 5 112.36 836.15
holobiont · control.pH_high.temp 20 15 209.98 651.35
holobiont · control.pH Control.temp 19 12 160.27 478.42
Whole organism 4 4 16.90 23.83
unannotated 1 1 7.53 7.53
live coral tissue/skeleton 1 1 10.74 10.74

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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