Detailed information of FUN_015663-T1 in Siderastrea siderea

Genomic Location: contig_12:13374453...13402684
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF18584
all species →		SYCP2_SLDSynaptonemal complex 2 Spt16M-like domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR040560
all species →		DomainSynaptonemal complex protein 2, Spt16M-like domainInterproscan
IPR024835
all species →		FamilySynaptonemal complex protein 2-likeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR15607
all species →		SYNAPTONEMAL COMPLEX PROTEIN-RELATEDInterproscan

 Gene Ontology
No Gene Ontology signature was detected for FUN_015663-T1. This gene does have a gene model — the search simply returned no hit.
Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K19529SYCP2; synaptonemal complex protein 2-Chromosome and associated proteinsko03036deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_015663-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
16TPM > 0
7Conditions
90.6Max TPM
5.1Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 2 6.55 89.88
holobiont · low.pH Control.temp 20 3 5.39 77.77
holobiont · control.pH_high.temp 20 3 6.20 90.55
holobiont · control.pH Control.temp 19 3 3.56 53.75
Whole organism 4 3 0.19 0.60
unannotated 1 1 1.79 1.79
live coral tissue/skeleton 1 1 1.42 1.42

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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