Detailed information of FUN_015704-T1 in Siderastrea siderea

Genomic Location: contig_12:13947052...13951578
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF02493
all species →		MORNMORN repeatRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR003409
all species →		RepeatMORN repeatInterproscan
IPR052472
all species →		FamilyMORN repeat-containing protein 3Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46511
all species →		MORN REPEAT-CONTAINING PROTEIN 3Interproscan

 Gene Ontology
No Gene Ontology signature was detected for FUN_015704-T1. This gene does have a gene model — the search simply returned no hit.
Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_015704-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_015704-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
49TPM > 0
7Conditions
445.6Max TPM
57.9Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 9 31.38 121.32
holobiont · low.pH Control.temp 20 12 83.62 320.38
holobiont · control.pH_high.temp 20 10 63.29 304.18
holobiont · control.pH Control.temp 19 12 67.06 445.57
Whole organism 4 4 12.38 13.01
unannotated 1 1 12.88 12.88
live coral tissue/skeleton 1 1 18.32 18.32

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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