Gene detail

Detailed information of FUN_015709-T1 in Siderastrea siderea

Genomic Location: contig_12:14008059...14048078
NR annotation: no NCBI-NR hit recorded
Species abbreviation SSIDE · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_015709-T1

ATGGACACCCTGGTAGATCTTGAGAAAAGAATTTTCAGCACCCTTGATCCATTCCGTGCGAGTTCTCAGCTCCAAGCGGTGCAGTGTAGGATTTGCCCATTTCCAGTTATCGTCCAGGAGTGTGGTGGACTCTATGATATTGTTGTGGACATGATGTATAAACTGCATGCAAGTTTGCCTGCAGACACATTGGTTGGACATAGGGAAAGGTTTTATTCTCATTTTGCTGAGCTTAAGAAGTTCTTCTTTGATGCTGGAAACATGGCATATGTCAAAGCTTTGGTGCCCATTCCTGTATTGCCCCAGAATCCTCCATCCTTCACTTTATCTGACCCCAAGCCTACATTGGTAAGATCAGCAAGCTTTGAAGGACCTCCTCGTAAATCAGTGCCAACTGACGACTTCAAGCGGCAAAGCCTTATGGAGCCCCTCACTGTTCCCATGACAGAACCATTATTCCAAGCCGCTCCTCAGacTCCAGAGGCTGATATGTTGGGAATAGACTTTTCAGATAGCCCCAAGACTGACGAcagAGATCTTATAATTTATCAGTTGCGACAGGAAATTGCACAACTTAAGCTAACTCTAGAGCTACAACAAAAAGAAGCCAAAGCTCTAGAAGATTCTCTTCGCTCACAGATTGCAAGTCTTACAGATGAACTGAACGAGTATAAGACAATTGCAGAAAAAGCCTGCGAGGAAAACGTATCACTTAGAAAAGACCTTGAGAGTAAAGATGAAGACAAGAAAGATCAGAAAGGTTCGGCAGAGGAAAAGTTTAGTAAGCTAAAAGGAATGTATGCAAAACTTAGAGAAGAACACATCCAGCTGTTAAGAACGAATGCTGAAGTGAAGCAAAAATTGAGTGGctcagaaaaggaaaaagagGAATTAAGTCAAGCAAATGAGAAGCTGCATCAGGAAGTCGATGACAAGTCAGCAGAACTTCTacaagtttttcaaaaagcagAAATGGCAGAACAGGATGGAAAGAGAGCTGAGGATGAAATTGAAAGACTGACGAAAGAGCATAACGACAAGATTTCATCTCTCATGGCAGAGTTGGAAACGCTAAAAGAAGAGCAAAGTAAAACAGAAGAGTCAAGGAAAACGGCTGAAGAACAAATAGAATCAATGAAGAAAGATCACGAGGGGAAGATTTTAGCCCTAACCAGTAATCTGACAGATGTTCAGAAAAGCAAGATAGATGAAGAGGCAGCTAAAAGAACAGCAGAAGAAACTGTtgagagagaaagaaaagaaaatgaagaaaagATTTCACGTCTCATGGTGGAGCTGGAAACAATAAcgaaagaaaaaggtgaaaCAGAAGAAGCGAGAAAAACAGCCGAAGAACAAATAGAATTCATGAAGAAAGAACATGAGGAAAAGATTGCAGCACTTAACATTAATCTGTCAGATGTTCACAAGAGCAGGACAGATGAAGAAACAGCTAAAAGAAAAGCAGAGGAAACCAttgaaagagaaagaaaagaacaccAAGAAAAGGTAACTGAGCTAGAAAAAGAAAGACGCGAAGAGCTTTTCAAGGAAAAACAAGATCTAGTTGGTATGGCTATAGAGACAGCAGAAAAAACAATACAAGACGCTTTGGACCAGTTTGAAAATCCGAGACATAGTTCGACAACTTGTACTGCAGATTACTTGTTGAGCAGAATTGAAAGTCTTCCAGGCGTTGCTGATGAGCTTAATTCAAAGTTTGCTGCATACCAGCAAGATCACAAAGATGCTGTTCCCTGTGCTTGTTGTCTTGGTTCGTTCTCATATCAACTCAGTGAATGTATTCTAAACGCCAAGGCCACTTCCCACATGGCGCCCACTCAAGAGGCTGCAGATCTTCATTCACTTGGTGAATCAGCTGGCAAGGCATCTCTGGAGCTGCTCAGCctctacaaacaaacaaatccaGATCCGAATGCTATTGCTGATAAAGTGAATGCTGTGAAAAAGTATATCATCGACATAACCAAAGTGGCTGAGGCTCTCGCCCCCAAAGAGAAGGACAATATGGACAGTATTGGCGGCGAAGTTGACGATGAAATTAACGCCACAGCTGAGCTTGTTGCAGATTCAGCCGCCAGAATTGAGGAAATGATTAACAAAACAAGAGAGAAATACAGTGGTGTTCAACTCGAGGTGAACGGAAGaATTCTTGATTCCTGCACTGCATTAATGGAGGCAATTAAGAACCTGATAATGAAGTCGAAGGTTTTACAAAAGGAGATTGTCGACGAAGGCAGGGGCCAAGCGACAGCAAAGGAGTTCTACAAACGTCATCACCGCTGGACTGAGGGACTTATATCAGCCGCCAAGGCGGTTGGATGGGGGGCTAAGGTGCTTGTcgaCTCAGCTGATAAAGTTGTCCAAGGAGAAGGGAAGTTTGAAGAGATTGTGGTGGCATCCAATGAGATCACAGCAAGCACAGTTCAACTGGTGAGTGAGACTTGCGAGATCGGTCTTCACAAAGTCGATGTACAGTCAAGACTTCCGTCAGGGTCACACAACAGGGCTGGGTTCCAAAATAAGTGCGTCCTGCAACAAAAGAAGTAG

Transcript

FUN_015709-T1

gggagggggttgtcTTGCTGTTCCCACAGATTTGCCACAGTTGTATTTAAGTGTTTATCTATAAATTTCTGTACTCAATCTTTTGTCTGTTGTACCCAGAATGAGTCAATTCCTGGTACTCTTCGTAACAGTGATGGTGGACCGATCAAGTATTCTGGAACAGATGTCAATGATTATTTTGAATTGGCAGTGGATATCTTTGATTACATGGACACCCTGGTAGATCTTGAGAAAAGAATTTTCAGCACCCTTGATCCATTCCGTGCGAGTTCTCAGCTCCAAGCGGTGCAGTGTAGGATTTGCCCATTTCCAGTTATCGTCCAGGAGTGTGGTGGACTCTATGATATTGTTGTGGACATGATGTATAAACTGCATGCAAGTTTGCCTGCAGACACATTGGTTGGACATAGGGAAAGGTTTTATTCTCATTTTGCTGAGCTTAAGAAGTTCTTCTTTGATGCTGGAAACATGGCATATGTCAAAGCTTTGGTGCCCATTCCTGTATTGCCCCAGAATCCTCCATCCTTCACTTTATCTGACCCCAAGCCTACATTGGTAAGATCAGCAAGCTTTGAAGGACCTCCTCGTAAATCAGTGCCAACTGACGACTTCAAGCGGCAAAGCCTTATGGAGCCCCTCACTGTTCCCATGACAGAACCATTATTCCAAGCCGCTCCTCAGacTCCAGAGGCTGATATGTTGGGAATAGACTTTTCAGATAGCCCCAAGACTGACGAcagAGATCTTATAATTTATCAGTTGCGACAGGAAATTGCACAACTTAAGCTAACTCTAGAGCTACAACAAAAAGAAGCCAAAGCTCTAGAAGATTCTCTTCGCTCACAGATTGCAAGTCTTACAGATGAACTGAACGAGTATAAGACAATTGCAGAAAAAGCCTGCGAGGAAAACGTATCACTTAGAAAAGACCTTGAGAGTAAAGATGAAGACAAGAAAGATCAGAAAGGTTCGGCAGAGGAAAAGTTTAGTAAGCTAAAAGGAATGTATGCAAAACTTAGAGAAGAACACATCCAGCTGTTAAGAACGAATGCTGAAGTGAAGCAAAAATTGAGTGGctcagaaaaggaaaaagagGAATTAAGTCAAGCAAATGAGAAGCTGCATCAGGAAGTCGATGACAAGTCAGCAGAACTTCTacaagtttttcaaaaagcagAAATGGCAGAACAGGATGGAAAGAGAGCTGAGGATGAAATTGAAAGACTGACGAAAGAGCATAACGACAAGATTTCATCTCTCATGGCAGAGTTGGAAACGCTAAAAGAAGAGCAAAGTAAAACAGAAGAGTCAAGGAAAACGGCTGAAGAACAAATAGAATCAATGAAGAAAGATCACGAGGGGAAGATTTTAGCCCTAACCAGTAATCTGACAGATGTTCAGAAAAGCAAGATAGATGAAGAGGCAGCTAAAAGAACAGCAGAAGAAACTGTtgagagagaaagaaaagaaaatgaagaaaagATTTCACGTCTCATGGTGGAGCTGGAAACAATAAcgaaagaaaaaggtgaaaCAGAAGAAGCGAGAAAAACAGCCGAAGAACAAATAGAATTCATGAAGAAAGAACATGAGGAAAAGATTGCAGCACTTAACATTAATCTGTCAGATGTTCACAAGAGCAGGACAGATGAAGAAACAGCTAAAAGAAAAGCAGAGGAAACCAttgaaagagaaagaaaagaacaccAAGAAAAGGTAACTGAGCTAGAAAAAGAAAGACGCGAAGAGCTTTTCAAGGAAAAACAAGATCTAGTTGGTATGGCTATAGAGACAGCAGAAAAAACAATACAAGACGCTTTGGACCAGTTTGAAAATCCGAGACATAGTTCGACAACTTGTACTGCAGATTACTTGTTGAGCAGAATTGAAAGTCTTCCAGGCGTTGCTGATGAGCTTAATTCAAAGTTTGCTGCATACCAGCAAGATCACAAAGATGCTGTTCCCTGTGCTTGTTGTCTTGGTTCGTTCTCATATCAACTCAGTGAATGTATTCTAAACGCCAAGGCCACTTCCCACATGGCGCCCACTCAAGAGGCTGCAGATCTTCATTCACTTGGTGAATCAGCTGGCAAGGCATCTCTGGAGCTGCTCAGCctctacaaacaaacaaatccaGATCCGAATGCTATTGCTGATAAAGTGAATGCTGTGAAAAAGTATATCATCGACATAACCAAAGTGGCTGAGGCTCTCGCCCCCAAAGAGAAGGACAATATGGACAGTATTGGCGGCGAAGTTGACGATGAAATTAACGCCACAGCTGAGCTTGTTGCAGATTCAGCCGCCAGAATTGAGGAAATGATTAACAAAACAAGAGAGAAATACAGTGGTGTTCAACTCGAGGTGAACGGAAGaATTCTTGATTCCTGCACTGCATTAATGGAGGCAATTAAGAACCTGATAATGAAGTCGAAGGTTTTACAAAAGGAGATTGTCGACGAAGGCAGGGGCCAAGCGACAGCAAAGGAGTTCTACAAACGTCATCACCGCTGGACTGAGGGACTTATATCAGCCGCCAAGGCGGTTGGATGGGGGGCTAAGGTGCTTGTcgaCTCAGCTGATAAAGTTGTCCAAGGAGAAGGGAAGTTTGAAGAGATTGTGGTGGCATCCAATGAGATCACAGCAAGCACAGTTCAACTGGTGAGTGAGACTTGCGAGATCGGTCTTCACAAAGTCGATGTACAGTCAAGACTTCCGTCAGGGTCACACAACAGGGCTGGGTTCCAAAATAAGTGCGTCCTGCAACAAAAGAAGTAG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07651 all species →	ANTH	ANTH domain	Repeat	Interproscan
PF01608 all species →	I_LWEQ	I/LWEQ domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011417 all species →	Domain	AP180 N-terminal homology (ANTH) domain	Interproscan
IPR002558 all species →	Domain	I/LWEQ domain	Interproscan
IPR035964 all species →	Homologous_superfamily	I/LWEQ domain superfamily	Interproscan
IPR030224 all species →	Family	Sla2 family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10407 all species →	HUNTINGTIN INTERACTING PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005543 all species →	Molecular Function	phospholipid binding	Interproscan
GO:0003779 all species →	Molecular Function	actin binding	Interproscan
GO:0006897 all species →	Biological Process	endocytosis	Interproscan
GO:0006919 all species →	Biological Process	obsolete activation of cysteine-type endopeptidase activity involved in apoptotic process	Interproscan
GO:0007015 all species →	Biological Process	actin filament organization	Interproscan
GO:0030136 all species →	Cellular Component	clathrin-coated vesicle	Interproscan
GO:0030276 all species →	Molecular Function	clathrin binding	Interproscan
GO:0030479 all species →	Cellular Component	actin cortical patch	Interproscan
GO:0032051 all species →	Molecular Function	clathrin light chain binding	Interproscan
GO:0035615 all species →	Molecular Function	clathrin adaptor activity	Interproscan
GO:0043325 all species →	Molecular Function	phosphatidylinositol-3,4-bisphosphate binding	Interproscan
GO:0048268 all species →	Biological Process	clathrin coat assembly	Interproscan
GO:0051015 all species →	Molecular Function	actin filament binding	Interproscan
GO:0080025 all species →	Molecular Function	phosphatidylinositol-3,5-bisphosphate binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_015709-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.