Detailed information of FUN_015830-T1 in Siderastrea siderea

Genomic Location: contig_13:1473303...1495537
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF04326
all species →		SLFN_AlbA_2Schlafen, AlbA_2DomainInterproscan
PF13538
all species →		UvrD_C_2UvrD-like helicase C-terminal domainDomainInterproscan
PF21026
all species →		SLFN_GTPase-likeSchlafen, GTPase-like domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR027417
all species →		Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR038461
all species →		Homologous_superfamilySchlafen, AlbA_2 domain superfamilyInterproscan
IPR007421
all species →		DomainSchlafen, AlbA_2 domainInterproscan
IPR027785
all species →		DomainUvrD-like helicase C-terminal domainInterproscan
IPR048729
all species →		DomainSchlafen, GTPase-like domainInterproscan
IPR029684
all species →		FamilySchlafen familyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12155
all species →		SCHLAFENInterproscan

 Gene Ontology
No Gene Ontology signature was detected for FUN_015830-T1. This gene does have a gene model — the search simply returned no hit.
Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K24459SLFN13; schlafen family member 13EC:3.1.-.-
Transfer RNA biogenesisko03016deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_015830-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
16TPM > 0
7Conditions
55.7Max TPM
4.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 2 2.22 27.65
holobiont · low.pH Control.temp 20 1 0.70 13.99
holobiont · control.pH_high.temp 20 3 4.32 55.71
holobiont · control.pH Control.temp 19 4 6.80 44.86
Whole organism 4 4 14.78 32.21
unannotated 1 1 1.26 1.26
live coral tissue/skeleton 1 1 5.33 5.33

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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