Gene detail

Detailed information of FUN_016056-T1 in Dendrogyra cylindrus

Genomic Location: contig_26:909592...919468
NR annotation: XP_020629567.1, succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial-like [Orbicella faveolata]
Species Dendrogyra cylindrus · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_016056-T1

gaaattcaagatggcggccttATCGCGCGCTGGAAGAATGCCTTCCATTTGCAGAAAATGCGCTGGGTTAACAGACAGATTTTGGCTTCGATCTCCACAGGCAGGTGCAGCAAGTGTTATCCCAGTCAGATGGTTGAATCTCCAAGAATTCCAGAGCAAGAAATTAATGGCTGACAATGGCCTTCATGTGCAGAGATTTAAAGTTGCAGAAAATGCTAAAGAAGCAGTTGAAATTGCCAAGGAATTAAATGCTAAAGAATTTGTTCTAAAGGCACAAATCCTTGCTGGTGGTAGAGGAAAAGGAACATTCACAAGCGGTCTGCAGGGCGGTGTTCATTTGACAACGGATCCAGAAAAAATTGGCCAACTGACAGAACAAATGGTAGGATATAATCTAACAACCAAGCAAACACCTCCAGAGGGAGTGCCGGTAAAGAAGGTAATGGTTGCGGAGAGTTATGATATCGCACGTGAGACATACCTGGCCATTTTAATGGACAGAGCATACCATGGTCCTGTAATTGTCGGCAGTCCAAAAGGTGGCGTGGATATAGAGGAAGTTGCCAATAGCACACCAGAGCATATACACAAGGTGGCTGTTGATATTTTCAAAGGAATCCCAGACAAAGATGCCAGATATCTTGCAGAAAAATTAGAATTTAAAGGACCACTGTTAGAACAAGCTGCAGAACAGATAAAGTCACTCTATGAACTCTTCCTTAAAGTTGATGCTACACAAGTAGAAATCAATCCTTTTGGTGAAACACCTGACGGAAAAGttgtttgctTTGATGCCAAGTTTAACTTTGATGACAACGCCAGGTTCCGACAAAAAGAAGTGTTTGCTATGGATGATCAAAGTGAAAGTGACCCGAGAGAAGTAGAGGCTGGAAAATATGACCTCAATTATATTGGTCTGGATGGTAATATTGCTTGTCTTGTGAATGGTGCTGGCTTAGCAATGGCAACAATGGACATTATCAAACTTCATGGGGGTACCCCCGCTAATTTCTTAGATCTTGGGGGTGGTGTACAGGAGGAAGGTGTGTTCCAAGCCTTCAACATAGTAACAAAGGACCCTAGAGTTAAGTCAATTTTAGTGAATATATTCGGCGGAATTGTTGACTGTTCCATCGTAGCAAGTGGAATAACTTCTGCTTACAAAAGGCTTCATGTAAAAGTCCCTGTCGTAGTACGGTTAGAAGGTAGAAATGTGGAAAGTGCCAAACGCATTCTTACCGAGAGTGGAATGCCGCTGATCCCAGCAGACGATATGGACGACGCAGCAAGGAAGGCCGTCATTAGTCTGGTGGACTGATGCATTGTGGGATACTGATGGGACAataggagctctgtcacggatAGCGCTTAAATTATTTTGATTTGTCGTCCATAATCCGActcaatcttaaccatccttgttcctttttgatTTATTACTTCATCTCTACCGTGCTGGTCAACTATTAATTTAAATGTTCTTTCGAGCTGAAGGAAATTTTGTACAGCAGAAAAAACGACTGCAGTTATGAATACGTCGTGACATAGTTCCTTAAATAATGCAATGGTGAACAAGGATAACTCCTGGGTCACACAGTCTGAGTTATAAAATATGTATGATAGCATCCAAAAACTTAATTGCCGGGATATAATAAGCCTCTAGACAtcttttagctcgtcacgcattccccCCGCGTGGTGATCATTTTGCTCGTCACCGCGGCATTACTCTCGCGTGACGATCGGTGATCCCAAAGATCGTCTGCTAGAATATAATGTGGATGAATTTCAAATTCATCTTCGGGTGTGTCCTCCAACGATGAACTATTTTTTAATCAGCCCTGTTATAGTAAAAGCAACAGATTTGCTGTTTAAAATTAAGGGAGTTTTTGAAAGAACCACGACAGAGATGCACTTTTCTCgtaataataaaaatgtttctgatttctttcagaaacattttgtgtccgcgacaaatgtttcccggtttgcgcggcatagaaacaatcacgagcaacaatgtgtcctcgtttgccaccgcctttaaGGTTACCGTTTACCTTTGGCGGTGTCTCGGGTCAAAGCGAATTTTGTACACGAGCTTCGCCCACGCGAGAAAAAATTCAGCCCGCGTCAgaaaaaaatttactcgtgtCGCTAATCCCGctagctacgcaggctacaagGCATTTTCCAGTTAGGGTTAAAAAATAGTTGAATGAGTGATCGTACAAAAATCACGCTTGTGCAAGAAGTATCCAGAAATAAAAGATTCCCATACATGTTTTTGTTGCTTACATTAATTTGAGGTGAAATGAACAAATTCCCTTCGAGTTTTAGCTTCCAAAAGGCGACTCAGACGCTTGCATTAAGAGGTTGTGAAAAATTCGAGAAttcactttatttcaaaatggtTATTATTGTTAGCTTCCTCAATAAGCTTTAGTTTGATATGGGGTTGTTAGCTATGTACGGTTTAATCTGGACGCGCTATATCGCTTGGACGTGAGACACCTCCagaggtatacggtaaccttgcACCTACACGGTTTGCATCAAATCACTCAATAAACTCTGTAACGTGCCACAAGTGTTAACGTTTATAACTGATAAATGAATAGATTAATAAACTGGGACT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P53590	Succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial (Fragment) OS=Sus scrofa OX=9823 GN=SUCLG2 PE=1 SV=2
Q3MHX5	Succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial OS=Bos taurus OX=9913 GN=SUCLG2 PE=2 SV=1
Q96I99	Succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial OS=Homo sapiens OX=9606 GN=SUCLG2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001643 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08442 all species →	ATP-grasp_2	ATP-grasp domain	Domain	Interproscan
PF00549 all species →	Ligase_CoA	CoA-ligase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005809 all species →	Family	Succinate--CoA ligase-like, beta subunit	Interproscan
IPR034722 all species →	Family	Succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial	Interproscan
IPR013815 all species →	Homologous_superfamily	ATP-grasp fold, subdomain 1	Interproscan
IPR016102 all species →	Homologous_superfamily	Succinyl-CoA synthetase-like	Interproscan
IPR013650 all species →	Domain	ATP-grasp fold, succinyl-CoA synthetase-type	Interproscan
IPR005811 all species →	Domain	ATP-citrate synthase/succinyl-CoA ligase, C-terminal domain	Interproscan
IPR017866 all species →	Conserved_site	Succinyl-CoA synthetase, beta subunit, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11815 all species →	SUCCINYL-COA SYNTHETASE BETA CHAIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006099 all species →	Biological Process	tricarboxylic acid cycle	Interproscan
GO:0004776 all species →	Molecular Function	succinate-CoA ligase (GDP-forming) activity	Interproscan
GO:0006104 all species →	Biological Process	succinyl-CoA metabolic process	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0042709 all species →	Cellular Component	succinate-CoA ligase complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01900	LSC2; succinyl-CoA synthetase beta subunit	EC:6.2.1.4 EC:6.2.1.5	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.