Gene detail

Detailed information of FUN_016058-T1 in Colpophyllia natans

Genomic Location: contig_25:3245149...3247374
NR annotation: XP_020629243.1, uncharacterized protein LOC110066356 [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

FUN_016058-T1

ATGAACGGGGCTGTAATATCCAACACCCCAATAGCTGTTGACTTCTGGAGGTTGAGGCACTGCCAGCACTCgagaattttctttctttctcacaTGCACGCGGACCACACCGTTGGGCTGACCTCTTCGTGGAATTCTTACAAAATTTACTGCTCGGAAGTGACTATGAGGCTTGTAATAGCTAAACTTGGAGTTAACAGCGACCTCGTAGTTGGCCTTCCCTTAGATGAATGCATTGTTATGAATCTTGATGAAGATGGAAAGGAAAGCATGACTGTAACGCTTATTGACGCCAACCACTGTCCTGGTTCTGTCATGTTTATTTTCGAAGGCTACTTTGGGAAAATACTCTACACCGGCGATTTCCGTTACTGTCAACGTTTCACAACACACTCTGCTATTCAGAGGAAACAATTTGACGTCCTTTATTTGGACAATACTTATTGCGATGCGAAGTGCGCTTTTCCCACTCGTACTCAAGCAACCGTCAACATTCTCGAGATAATTAGAGGACATCCTGAATGCAAAGTTGTTATTGGGCTTCATAACCTTGGTAAAGAAATGCTTCTTCATACAATCGCTGTCGTGTTCAAAACTTGGATTGGAGTGGATCCTTTGAGAAAAGAAACACTGAAACTTCTTGAAATGCCCGATGTGTTTACCTGTGATGTAGACAAAGTAAGGATCAGGGTAGTGAAAAGTCACGAAATCACCAAGAAAAACCTTCAGTTTTGGAACTCACAAGAGCCAACTATCGCAATATTGCCAACATGTCTCTATGTTGGGGCAACAAACCCCTATGCCAATGTAGagaatgtttttgttgttcccTACTCAGATCATAGTTCTTTTGAAGAGTTGACAAAGTTCGTTCAGAATGTCAAGCCAAGGAAGATTATTCCCATTGTGCATAAACACAAACTGTCACCAGGTGAAACCATAAACAGTAGAGTGAATATGCAGGTATTTCAAGATCTGATGGATTCTACCCCATTGTCAGAATTTACTGTCCCTCATTCTGTAGAGTGTTTCATGACAGGAGAAATACAGCAAGAGAGAAAGCAAAGAGTGAAAGCAACAGCAAagataaaaaaagttgttaaggTCAAGAAACCTCGTGGAGTCATTTTTTCCCCCAGCCCagagaaaacagaaacaaaagggGACAAATGTGACCTGGAAATCAAAGAATCAGATGGAATGTTAATGGTCTTCAAGGGTGCAGGTCATGAAGAACATAGCAAGGAGCAAGAAATCACAGGAAATGGACAGAATGCTGACACTCTTTCTTCCAGTAAGTGCAGTTTTGCAGCTACTGAATCAGGTGAAAAATTAGAGATGGATGAATATTCATGTGAAGGAATCACAGTGGAGGAAATAAATACAACTGTCCACTTAGCAGACAGTGAATCAGGTGGAATTTCAGGTCCATGTACTGCTTCAGGTGAAGAAGATCATGATATGGCGCAACATAGTATTGGCAGTAAAATTAAGAAGGTGGATTCTACATCCATTGCATCTGGCTTGGTAGACAGTGAACCAGgagaaaaactaaacaaagataATGTTTTGGGTGATAAACCTTTTCAAGAGAAGAGCACGGTGCATGAGATCACAGGAAATAAAACAGATTCAGTTGCTTCTTCATCCAAAAGTGGCTTGACTGGCTGTGAATCCAGACAGACATCAAAGGCACTTAACTGTGAAGGTGATAAAGATTTTCAAGAGAACAGCATGGTGCATAAGATCACAGAAGATGAAATAAATTCAGTTCCTTCTTTGATCCAAAGTGGCTTGACTGGCTGTGAGTCAGGAGAAACATCGAGGGCACTTGACGTTGAAAGTGATAAAGAACCTGTCAGGGCACAGACAACCATAGGAGACAAGAAAGATGGAGTTGCTTCATCTATCAAAACCAAGAATATGTGTGACAGGATTTTGAACTCTCCAAAAGGAAATAATTCCAGTAGAGATGCTAGAGGAGTTAAAGCAACCCATCTAAAAGTCAAGGATTTGTGCAACAATGTTATTGTTCCAGTGGAGAATCTCTCCTTGAAAAGAAAGTACAGAGAGCTTAAGAACCCAAATGATGAGGACAGTGTTGATAGTGTTGACAAGAGTAGTTCAAGCAAGAAGAAATTCAATATTTATACTGGATGCTCATGTGATTTTGCACGGAAATTCTTGGCAGACATGGTGAAAAATGCTGCTTTGAAAGACAAATGA

Transcript

FUN_016058-T1

Protein

Uniprot

Uniprot term	Description
B0V2S2	5' exonuclease Apollo OS=Danio rerio OX=7955 GN=dclre1b PE=2 SV=1
Q8C7W7	5' exonuclease Apollo OS=Mus musculus OX=10090 GN=Dclre1b PE=1 SV=2
Q4KLY6	5' exonuclease Apollo OS=Rattus norvegicus OX=10116 GN=Dclre1b PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07522	DRMBL	DNA repair metallo-beta-lactamase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011084	Domain	DNA repair metallo-beta-lactamase	Interproscan
IPR036866	Homologous_superfamily	Ribonuclease Z/Hydroxyacylglutathione hydrolase-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23240	DNA CROSS-LINK REPAIR PROTEIN PSO2/SNM1-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000723	Biological Process	telomere maintenance	Interproscan
GO:0003684	Molecular Function	damaged DNA binding	Interproscan
GO:0006303	Biological Process	double-strand break repair via nonhomologous end joining	Interproscan
GO:0035312	Molecular Function	5'-3' DNA exonuclease activity	Interproscan
GO:0036297	Biological Process	interstrand cross-link repair	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K15341	DCLRE1B, SNM1B; DNA cross-link repair 1B protein	EC:3.1.-.-	DNA repair and recombination proteins	ko03400	deepkoala