Gene detail

Detailed information of FUN_016071-T1 in Dendrogyra cylindrus

Genomic Location: contig_26:1079382...1129865
NR annotation: XP_020629705.1, contactin-4-like isoform X1 [Orbicella faveolata]
Species Dendrogyra cylindrus · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_016071-T1

ATGAACGTCAGCTGTTTGAATAATGTATTTACCATTAAGTTCCTTCTTCTGCTGCTTCTCTTGAAAGTTGGTGGTACCTTAAAGCCAGTGATCCTGAGCGAGCCTCAAGACGTTACAGTATCAACTGCCAGTTTCTTCATCTCTTGCATCAAATCACTAGGCTCTACTGTCGCTTGGTATCGTAACGGCAAGCAGGTCAATACCGCACGGTATGCAGACTTACAAGTGTCAAGGGATGGGTCGTTACATGTGAAAAATGCACGGAAAGATAGAGATGAAGGTTCTTATTACTGTATGGTATCCAACAGGATAGGGTCGGTCATCAGTAGGACGGCAACTGTGAAGTTTGCATATCTTAATCCATTCACAGTCGGGGACTGGGTGGTTGACAAGGAAGAGGGCAAGGATGCCATCATAACCTGCAAGGCACCTGAGTCTTTTCCATACCGTACAATCGAGTGGAAAAAAGGTGGAAAACAGCTACCGAGCCAATCAGGACACTTAGCAATAAGCCAAGAGAGGGACTTGCACTTTGCTTATCTAGAGTCGTCAGATGAGGGAGTGTATGAATGCACCGTCACCAACTTGTTCATAAAGAAGAAAGTGGTCAGAACAGTTACTGTGTTTGTAACACCAGGAACAGTTCCATTGAACAAGCCACCAAGAGTAGCTGATGATTTCAGTGTGCCAAAGACGGCCTTAAAGGGACAGAAGTTTGTTCTAGAGTGTATTGTTTATGGAAAACCAGTTCCCAAAATAACAATGAGGAAGAAAGGACTACACACAACGTTAGGAAGAACGACTGGGAATATCAACAGGCTTGTGATGAACAGCTTTGGACCGGACGATGCAGGAAAGTACAAGTGCAAGGCAAGCGACAGATCAGGACAATCAGACACAAAATCCACAATTATTACAATGGAAGCTAAGCCCGAGTGGATCCTTAAACCACAGGACACCACAGCAGGATCGAACACCACAGTCACCCTACCTTGTATTGCCTATGGAATACCGAGCACTACATACACCTGGTTTCTGAATGGCAAACCTCTTATATGGACAAATAGACATAACATTACTGGTGGAAATTTAACAATTAAAGACTTGACACGTCGTGATAACGGCATGTATCAGTGTTTTGTTAACAACAAACATGGCCAATTACATGCTGATATTAAGCTCACTGTTTCAGAAATTCCTGCTGGATTTGGGCCAGGAACGAAAGCCCCAGAACCCAATACAAATGCTCTCATCCACACAAGTGTTGAACTGGCATGCAACCCAACTGGGGAACCAAAGCCGACCATTCGCTGGCTGTTTAATGGTCTGATGTACCTCCAAAGTACAAGAAGGTTTCAGATTTTGTCAAACGGAAATTTAAGGATCAGTAATGTTACTAAAGCCGACTCTGGATACTATATCTGCGAGGCTTCTAATAGACTAGGCAAAGCCACAAGAAAGGGGCATCTCAATGTTCTTGAATACATCATCTTAACCAACAACATGAATAGAACCACTTCAGTTGTCCTTGGCAAAAGCATCAGGATTATGTGCGGTGTTAAAACATTAAGTGGAATAGAGATCACATTTCAGTGGTCAAAGTATGGTGTCCCAGTTGTACCAACCCCTCGTGTTAAAATCACGAGAACAGATAGCACCAACCGTTTGTCATATACAAGTGACATGAGAGGCTACTTAAAGATCACTGGAGCTCAATACACTGATGCAGGGCTCTACACATGCCAGATTGTCGGAAATAAAAAGATCGTCGCTTCCAAGAATGTCTTATTGAAAGTCAAAGGCCCTCCTGATCCACCAACAAATGTGAACGTTGGCCATGGAAACACAAGAGGTGAATTTGTTAATGTTACATGGACCCTGGGAAAGTCAAACAAAAGCCCAATAAAGAAAGTCATCATTGAACACAAGACACAATTCACCCCCTCAACTTGGCACATGATTGCTGAAGAATCTGTACCTGAGAAAGGCTGGACACAAATTGCTCTGTCTCCATGGGTACGCTATACGTTCCGTGTTGTTGCTGTCAACGAAGTTGGCAACAGTATGCCAAGTGCTCAATCCTCTAGTTTCCAAGCTCCTGCTGCAGCTCCGAGCAAATATCCTCAGAATTTGAGAGGTGTAGGAACATCCCCCTCTACCCTGAAGATCACATGGCAACCCCTCCCACCCATCGACCACAGTGGTCCTGGTTTTTACTACGTTATCTATCACCAAAGGGCCGACAGCAAGGGGCAGCTGTTTCGGAGTGAAGTTAAAAATGCTTCGTCGTTCCAAGTGTTTGGTGCAGATTACTATGTGAAGTATATGATCCAGATACAAGCTGCAAATGAAATTGGCTTTGGGCCCAAAAGCCCATTTGTTTTTGGTTATTCTGGCGAAAAAATACCAGTGGGATCTCCAAGGGATCTTGATGTTCGCATTACATCACCAACATCAGCTTACGCAACCTGGACTGGAGTCCCAGATACAAGGGACACAGTACGTGGCAAACTGTTGGGCTACAAGGTGTATTTTTGGAAAGCGCCGAGTGGCCAAACACCCCCACCTCAAGCAGAATACAAGGCAACAATTGACACTTCTACCACTTTACATTTACAAGCTTACACATCCTACAGATTTCAAGTTGTTGCTTATAACAGTGTGGGTGATGGTCCAGCAAGTAATGTTGTGGGACCCCTGACCACACCTGAATCAAAATTTAATGGCACTACCAATAATCGCACAGGATTATGCAGCTGGGTGAAAGGGCAAAGGTTTCTTTGTCTGGGAAATTTTCCAGAAAGACCACGTGGACTAGCCCTAATTGTCCAAAACAAGTCGTACATCGTACTTCAATGGAGTCCTCCAGGAAAAACTAATGGCATTGTGCTTGACTACCAAGTTTCTGCCCTGAAACTACCAGAAACAGGGACAATTATGAAATGGCACACAAATGACAGTACCACTGAATTAAGAATACCCCAGCTTGACCCGCAGGCCACCTACAAAATTTCAGTGATGGCTATAAATAGAATCGGCAAGGGTCCCCCGGTGTTGGCAACTTTTGATCTAACAGCAGCACCTCAAAGTTCACCAACTAATGTGACAGCAAAGTTTCACGACATGAACCAGGAAGTACTGTTAACATGGAGAAGTTCACTGACAGATATTGAAGGATTCCGGATATTTTACTGGAGTACTAAAGAAGACATGCAAACTGTTGATGTTGCAAAAtcaagaagaagaaaacaaatatCAATAGATATTCAGGATAATAAGAAAGTCTATCATTTTCAGTTGGCGGCCTTCAAAGTAATTCATGGAGGTCACTATATTCTTGGACCAAAATCCATGCGAGTCAGCGCAGGAAAAGTTCAAGTGCCAGCAAGAAGGGCAAAGTCGTCAGGAAGTTTCTTTGATAGTCCAAGTACTTTGCTTCTGTATTCACAGCTTGTTATCTTCATCAGTCTGCTATGGCTGCAGGCCAGATAA

Transcript

FUN_016071-T1

AACAAGACAACAGTCAACGTTTCAACAGTTTAGTTCCCACACTTGTCTACGACATCACAAGCTGCCATGCATTTATACCCCGTTTAACAGGAGCGGAGTGGCAATGTCGGCAATGGTCGATCACCCACGGTTGTATTCGATCGAAGGCTTCATCAAAGCGTGTCGTATGTCTTTTTGATAGCAGCAAATTGTGCTCTGGAAGAACTTCCAATGAAAGATCGGACAGAGTTTCAAGTATGAATCAACTACAAAATGAACGTCAGCTGTTTGAATAATGTATTTACCATTAAGTTCCTTCTTCTGCTGCTTCTCTTGAAAGTTGGTGGTACCTTAAAGCCAGTGATCCTGAGCGAGCCTCAAGACGTTACAGTATCAACTGCCAGTTTCTTCATCTCTTGCATCAAATCACTAGGCTCTACTGTCGCTTGGTATCGTAACGGCAAGCAGGTCAATACCGCACGGTATGCAGACTTACAAGTGTCAAGGGATGGGTCGTTACATGTGAAAAATGCACGGAAAGATAGAGATGAAGGTTCTTATTACTGTATGGTATCCAACAGGATAGGGTCGGTCATCAGTAGGACGGCAACTGTGAAGTTTGCATATCTTAATCCATTCACAGTCGGGGACTGGGTGGTTGACAAGGAAGAGGGCAAGGATGCCATCATAACCTGCAAGGCACCTGAGTCTTTTCCATACCGTACAATCGAGTGGAAAAAAGGTGGAAAACAGCTACCGAGCCAATCAGGACACTTAGCAATAAGCCAAGAGAGGGACTTGCACTTTGCTTATCTAGAGTCGTCAGATGAGGGAGTGTATGAATGCACCGTCACCAACTTGTTCATAAAGAAGAAAGTGGTCAGAACAGTTACTGTGTTTGTAACACCAGGAACAGTTCCATTGAACAAGCCACCAAGAGTAGCTGATGATTTCAGTGTGCCAAAGACGGCCTTAAAGGGACAGAAGTTTGTTCTAGAGTGTATTGTTTATGGAAAACCAGTTCCCAAAATAACAATGAGGAAGAAAGGACTACACACAACGTTAGGAAGAACGACTGGGAATATCAACAGGCTTGTGATGAACAGCTTTGGACCGGACGATGCAGGAAAGTACAAGTGCAAGGCAAGCGACAGATCAGGACAATCAGACACAAAATCCACAATTATTACAATGGAAGCTAAGCCCGAGTGGATCCTTAAACCACAGGACACCACAGCAGGATCGAACACCACAGTCACCCTACCTTGTATTGCCTATGGAATACCGAGCACTACATACACCTGGTTTCTGAATGGCAAACCTCTTATATGGACAAATAGACATAACATTACTGGTGGAAATTTAACAATTAAAGACTTGACACGTCGTGATAACGGCATGTATCAGTGTTTTGTTAACAACAAACATGGCCAATTACATGCTGATATTAAGCTCACTGTTTCAGAAATTCCTGCTGGATTTGGGCCAGGAACGAAAGCCCCAGAACCCAATACAAATGCTCTCATCCACACAAGTGTTGAACTGGCATGCAACCCAACTGGGGAACCAAAGCCGACCATTCGCTGGCTGTTTAATGGTCTGATGTACCTCCAAAGTACAAGAAGGTTTCAGATTTTGTCAAACGGAAATTTAAGGATCAGTAATGTTACTAAAGCCGACTCTGGATACTATATCTGCGAGGCTTCTAATAGACTAGGCAAAGCCACAAGAAAGGGGCATCTCAATGTTCTTGAATACATCATCTTAACCAACAACATGAATAGAACCACTTCAGTTGTCCTTGGCAAAAGCATCAGGATTATGTGCGGTGTTAAAACATTAAGTGGAATAGAGATCACATTTCAGTGGTCAAAGTATGGTGTCCCAGTTGTACCAACCCCTCGTGTTAAAATCACGAGAACAGATAGCACCAACCGTTTGTCATATACAAGTGACATGAGAGGCTACTTAAAGATCACTGGAGCTCAATACACTGATGCAGGGCTCTACACATGCCAGATTGTCGGAAATAAAAAGATCGTCGCTTCCAAGAATGTCTTATTGAAAGTCAAAGGCCCTCCTGATCCACCAACAAATGTGAACGTTGGCCATGGAAACACAAGAGGTGAATTTGTTAATGTTACATGGACCCTGGGAAAGTCAAACAAAAGCCCAATAAAGAAAGTCATCATTGAACACAAGACACAATTCACCCCCTCAACTTGGCACATGATTGCTGAAGAATCTGTACCTGAGAAAGGCTGGACACAAATTGCTCTGTCTCCATGGGTACGCTATACGTTCCGTGTTGTTGCTGTCAACGAAGTTGGCAACAGTATGCCAAGTGCTCAATCCTCTAGTTTCCAAGCTCCTGCTGCAGCTCCGAGCAAATATCCTCAGAATTTGAGAGGTGTAGGAACATCCCCCTCTACCCTGAAGATCACATGGCAACCCCTCCCACCCATCGACCACAGTGGTCCTGGTTTTTACTACGTTATCTATCACCAAAGGGCCGACAGCAAGGGGCAGCTGTTTCGGAGTGAAGTTAAAAATGCTTCGTCGTTCCAAGTGTTTGGTGCAGATTACTATGTGAAGTATATGATCCAGATACAAGCTGCAAATGAAATTGGCTTTGGGCCCAAAAGCCCATTTGTTTTTGGTTATTCTGGCGAAAAAATACCAGTGGGATCTCCAAGGGATCTTGATGTTCGCATTACATCACCAACATCAGCTTACGCAACCTGGACTGGAGTCCCAGATACAAGGGACACAGTACGTGGCAAACTGTTGGGCTACAAGGTGTATTTTTGGAAAGCGCCGAGTGGCCAAACACCCCCACCTCAAGCAGAATACAAGGCAACAATTGACACTTCTACCACTTTACATTTACAAGCTTACACATCCTACAGATTTCAAGTTGTTGCTTATAACAGTGTGGGTGATGGTCCAGCAAGTAATGTTGTGGGACCCCTGACCACACCTGAATCAAAATTTAATGGCACTACCAATAATCGCACAGGATTATGCAGCTGGGTGAAAGGGCAAAGGTTTCTTTGTCTGGGAAATTTTCCAGAAAGACCACGTGGACTAGCCCTAATTGTCCAAAACAAGTCGTACATCGTACTTCAATGGAGTCCTCCAGGAAAAACTAATGGCATTGTGCTTGACTACCAAGTTTCTGCCCTGAAACTACCAGAAACAGGGACAATTATGAAATGGCACACAAATGACAGTACCACTGAATTAAGAATACCCCAGCTTGACCCGCAGGCCACCTACAAAATTTCAGTGATGGCTATAAATAGAATCGGCAAGGGTCCCCCGGTGTTGGCAACTTTTGATCTAACAGCAGCACCTCAAAGTTCACCAACTAATGTGACAGCAAAGTTTCACGACATGAACCAGGAAGTACTGTTAACATGGAGAAGTTCACTGACAGATATTGAAGGATTCCGGATATTTTACTGGAGTACTAAAGAAGACATGCAAACTGTTGATGTTGCAAAAtcaagaagaagaaaacaaatatCAATAGATATTCAGGATAATAAGAAAGTCTATCATTTTCAGTTGGCGGCCTTCAAAGTAATTCATGGAGGTCACTATATTCTTGGACCAAAATCCATGCGAGTCAGCGCAGGAAAAGTTCAAGTGCCAGCAAGAAGGGCAAAGTCGTCAGGAAGTTTCTTTGATAGTCCAAGTACTTTGCTTCTGTATTCACAGCTTGTTATCTTCATCAGTCTGCTATGGCTGCAGGCCAGATAACCCACAGAGAGAGAAAAATCTCGTTATTCAATGATCCCATGTAAATCTCTTTCGATATCGAGGAACATGATAACAGCTGCCAAATCCAAAGAGTGAAGGGAAGATTTGCTTGAAACAGCACCGGCCGCTCGATTCGGAAGACTCCCGAGACGACACTTGACATAGTGGCCCAGGCTAAATCACACAAACACTTAGCCTCTGTGACAATGTTAACAATATTTCAAAGTCAAGGAAAAATATTTCAGATTCAAGGAACAAGAACATCGATTCAGTGCAGTATCATATGTTTCAGAGGACAAATGAATCACGAACAGTTATTTAACTTGCTACAAATGCATTGAGTATATAGATGCCAATGACAATTAAATAAACTTACTTCCAAGAAGCGGAAAACCGTTAGCTCCTGTGAAGTAACGCGTAACCGTTCAATTTCAGTTATCAAGAATAGttgaatattttaatatttaatttgaaTTACAATATTGGGTAAACTGCCGCCTTGGACAACAGAAAAAGACAGTTTATTTCTTAGTCTCCTGAACTGCTGTAAACTGTTCTTATTTGCAGCTGATAGTGGTTACACAACCCTAGCTTCCACTTCCACTCTAAACAGCAATGAAGAAAACTATCACGGTAAAATGTAGAACTTTATTACTCTACTAGCAAcgattttttggatttttttgtcaacctcgtccccagggcacTTTTCCCTTCAGAGCGGGAAAGGGAAAAGCGCCCGGGGGAcgacgttgttgttttgttagTAAGGGTCTCACCTTAGTTTCTAAGGGACTGTAGATAtggaaaaaatggaaagaagGTTCACGCTCCACACTGAGCCATCTTTTACTAAAGAACTTTTCATACATTTCTGCGTAAACAGCTTTGAACCGTTAACGTCACAAATCACAAAATGGCTTGGACTATggaggttgggggggggggggggaggggaggagttACTTGCTTGGGGTCGAGCCAATTTTTTCCATGTAAGCAATTTTGTGCATGAAACTGGGAGTCGGCCTTTTTTCGTTTTCAGAGTCATTTCTAACATGAACAGCTTTGGTAAAAGATGGCTTGGAGGCGGGGTTTGATCTCCAACCAGGGACACTTTTGTCCATATAATAGGCCCACATGTTACGAGACCCACATGCCAATATGTAGTTTTAGGCCCATATGTAATGTTGCTAAACTTGGTGGGTGCATCCTATCTGGGCTTTACGAACAGAtaatgtataagcttataactGAGGCAAGATAAATCGTTATTTATGACAATTAAAGTCATTCTGATCTAAATTAATCAACGGTTCTGAATTTATGAGCCAGATAAATTGTCAAAAGATGTAATATATTACTTAATTCGTGAGATTTTTATGAAGTTATTCATCACGAAGATGTGTTTTGCTTATAATTAAGCACGcgcttttcttaaaaaaaaagaaaaccaaaaagGGTTTTAAATTTggtgaaaaataattataattttggGTTTTAGCCAAAAAATGCTGTTTTATATTAAAAGCCAGTGCAAACGCGAGttaaacaaaaatttaataagcaTTTAGCTTTGGGCTGATTTCTATTTATTAGTTGAAATATGGCATATGTTCACAACTTACAGTGCTAGGAATTCGTTCGTTGCTGTTCAACCATGCAGGTTATTAATAGAGCGTTTcgactcacgtgaccagcggccatattggtttctttgttttggaacaccaatatggctgccgtgacgtcacatGAAAACGCTATTTAGGAAGCCATTTTTAAGCTGGGTTAAAAACCTGTGTGAACGTAATCAGCTTTAGAGTAAGCGTACATGTCACATCCTGCAGTCGTGTTCTAGTTTAGCAGTTACGTTCATTTACAATAATGGTTGTGATGTAGTCTAGTTTTCAGAACTTACAATAACCTGTAATTAGAAAGCAAGGAACTTGTTCGATTTACAGCAGAAGACAT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q98902	Neural cell adhesion molecule L1 OS=Takifugu rubripes OX=31033 GN=l1cam PE=3 SV=1
O42414	Neurofascin OS=Gallus gallus OX=9031 GN=NFASC PE=1 SV=1
P97527	Contactin-5 OS=Rattus norvegicus OX=10116 GN=Cntn5 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002551 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07686 all species →	V-set	Immunoglobulin V-set domain	Domain	Interproscan
PF13927 all species →	Ig_3	Immunoglobulin domain	Domain	Interproscan
PF00041 all species →	fn3	Fibronectin type III domain	Domain	Interproscan
PF07679 all species →	I-set	Immunoglobulin I-set domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR007110 all species →	Domain	Immunoglobulin-like domain	Interproscan
IPR003961 all species →	Domain	Fibronectin type III	Interproscan
IPR036116 all species →	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR003598 all species →	Domain	Immunoglobulin subtype 2	Interproscan
IPR036179 all species →	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR003599 all species →	Domain	Immunoglobulin subtype	Interproscan
IPR013106 all species →	Domain	Immunoglobulin V-set domain	Interproscan
IPR013098 all species →	Domain	Immunoglobulin I-set	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44170 all species →	PROTEIN SIDEKICK	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0098609 all species →	Biological Process	cell-cell adhesion	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06761	CNTN3; contactin 3	-	Cell adhesion molecules	ko04515	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.