Detailed information of FUN_016110-T1 in Colpophyllia natans

Genomic Location: contig_25:3797482...3816116
NR annotation: XP_020616498.1, whirlin-like isoform X1 [Orbicella faveolata]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q9P202Whirlin OS=Homo sapiens OX=9606 GN=WHRN PE=1 SV=4
Q810W9Whirlin OS=Rattus norvegicus OX=10116 GN=Whrn PE=1 SV=1
Q80VW5Whirlin OS=Mus musculus OX=10090 GN=Whrn PE=1 SV=3

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00595PDZPDZ domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001478DomainPDZ domainInterproscan
IPR036034Homologous_superfamilyPDZ superfamilyInterproscan
IPR051844FamilySensory Perception USH2 Complex ProteinInterproscan
IPR033028DomainWhirlin, harmonin_N-like domain 2Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR23116PDZ DOMAIN CONTAINING WHIRLIN AND HARMONIN-RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0005886Cellular Componentplasma membraneInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K21879WHRN, USH2D; whirlin-Cilium and associated proteinsko03037deepkoala

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