Gene detail

Detailed information of FUN_016137-T1 in Acropora pulchra

Genomic Location: ptg000010l:1986803...2002104
NR annotation: XP_029188671.2, LOW QUALITY PROTEIN: rabankyrin-5-like [Acropora millepora]
Species Acropora pulchra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_016137-T1

ATGGCGGTGGATGCTCAGGTAGCTAAGCTTGAGCGACATCTGAGCCTGTTGCGTCAGGAATATGTGAAGCTGCAGAACAGACTTATTGATGTGGAAAAGAAGTACAGCTTAGCAGTGGCGGCATCGGGACACACTGCGGGAGAACATGAAAATACGTTCGTTAATCGACTGCTGAGAACCGTTGCAGAACTGTATGATAAAGATTTATACAGTGACATCACAGTGTCCTTTGCCGATCAAATAATCAAGGCGCATAAATTTGTGTTGGCAGCACGTGGAGACCACTGGAGCAGTAGAGATTTAAATGAGATCAGTGAACTCCATCTAACTGATGTCAGTGCAGCAGTTGGCCTTACATTGATGAAGTGGGTTTATACAGACCGAGCTGAAATTCCAAATGATGAAACATTTCTTATAGAGCTTGTTAAGACGGCTCAAAAATACAGACTCAAAGAACTTAAGGAGAGGTGTGAAAAGATGTTGATGTCATCAGTTTCAGTGTCGAACTGTATTAAGTTTTACCAGACAGCAGAGGATATCGGTGCAAAAGACTTACAGAAATACTGTGCAGAAATCATCTCTAATCATTGGCATGACCTAAAAACGGAAGATTTTACTGAGATGAGTGCACCACTGCTCTATGAAATGTTCAAATCAAAGTCTGGTTTTCCCTTGCACCTTGCAGTCAGGCATCACCGAGAAGATGTAGTTTTCCTTTTCCTTATTGAGTTTGACTCTCAGTTACCTGGTAAGTTGAATGAAGTGGATCCATCCTGTGGTCAGGTGCCCTTACACATTGCTCTGACTGAACAGCAAGAGAGCATTGCTAGGACTCTTGTTGGTCATGGTTGTGATGTTGACATGCCTGACATCGCAGATGGTCAGTGCTTGTTGCACAAGGCAATAATGCAAGGGGATGAGTTTTCTGCAACTTTTCTGATCAAGAATGGAGCAAATGGGAATGCAGCCACACATAGTGAACATGTCACCCCATTGCATCTTACTGCTTCCTTCAGGCCATGGTCAACCTCTTCCATGTCAAAACAAAATGCGTCCAAAATGGCATCATCAGAAGGAATGGCAAGAATAACTGATCTATTGCTGGAAAATAGCGCAAATGGGGATGCTCAAGATAGTACAGGGAGGACTGCTTTACACAGAGCAATAGAAGCTAAAAACGATGCTGTTTTAAATGCCCTTCTGCAGAAAGCCAAACTAAATCTTGAACTGCGCAACAATGATGGCCATGTTCCTCTGTGGTTAGCACTTTCTCATGACCCAGACTTTGCTCCAATGGATGAAGACAGTTTGGCAGCAAGATTGATGAAGCATGGAGCAAGCCCCGATGCTGTCAACAATATCAGTGGAGACTCCCTGTTGCATATGGCTGCTGCTAGTGGTTTGGAGGAAGCTGGTTTGTTTTTAGCATCACATGGCGCCCAACCCAACCATGCCAACAAACATGGGGAAATGCCACTTCATGTAGCTTCCAGAACAGGATTGGCAAGACTTGTCTTTGAACTTCTTAATAATGGTGCAAATCCAAATGCACAGACAACTGATACTGAAGGCTTAAAGGTTAAAGCCATTGAGAGAGCTGAGGCCAGGGAAATAGCAAAGAAAGAGGCCAGACAAAAGGCTCTGGACATGTTCAAAGAAATGCAAGCAAAGAAAGCTAAGGAAATGGAGCGGCAGATGGCAACACAGAAACTTCCCTCATCCAAAGCCAAGCCTACTCTTAGTGCACCAAGGATATCAACTAGTAAAATGAATTCTTTTGAGGAAGATCTTGGTCACAGCACAAATCTTATTGATGAGGAAAACACCAACCCTTTTCTTGATGACATCAGAGCTGCCTCGGCAGCTGCTTCTGCTTTGTCATTTGGTGGAAATCCTTTTGAGGACACACCCAACACAGAGTCTAACTCATTACCAGACCCTGCTCCATATACCCCACCGGAAGTTCCTGGAACAGAGGCGGCTGAGACTCCAACAGAAGACATGATCAATAAAATGATTGACGAATTCCAACTGTATAGAGATCCTTACCTCACTGATGTAATAACAGAATGCTATGGAAGGACACCACTTCATATTGCTGTCACTGATAAACGCAAAGATGTCGTAAATTGCTTTATAGATTTTCGGGGTAGCCTTGGACGAGGTGGTCGTCTTCCTATTGTACCCGACTTTAACCTATCAGACAGTGAAGACCAGGCGCCATTAGAGCTGGCTCTGTGTACCGGACAAATATCAATTGCTCAAAGACTTCTAGAAGCGGGAGCCAGTATTGAACAACAGACAGCAAACGGGCTCACATTGCTACACAAAGCTGTCAGGAGAGGCGACAGCGAAAGTTCATTGTTTTTGCTGGATCATGGAGCAGACATAAACAACATGACCAAGGATAACAAAACACCTCTTCAGTTAGCAATCCAGTGTCATCTGCAGCCAGTTGTTAACGCTCTTTGTCAAAAAGGTGCAGATTTGAATACCTGTGACGAAAAAAACAACTGCCCACTCTGGGTGGCTTTAAAGGGTGGACAACAAGACATAGCTTCCACTTTGGTCAGGTATTGCTGTGACACCGATGCATGGAACCGAGGGCCCAATGGCTGTACCCAGTCTCTTCTCCATCGTGCTATACAAGAGGGTGATGAGCCATCGGCTTGTTTCCTGATTCGCAGTCGCTGTGACATACACAGTCCAAGACGGCCAGGTCCCGATGGTGAGGGAGGCGTAGAGGCCTGGGATGGAATGACCCCTCTGCATTTAGCCTGTGAGGCTGGTTTGGATAACGTGGTGCAAAGTCTGTTCGAACATAAAGTCAACGTGAATAGTAAGGATTCAGAGAGTCGCACTCCAATACACATCGCCATCACGTGCAAACATCCGATGGTTATCAGGCTTCTGCTCAGTCATCCAGAACTCAACATGAATGTCAAGGACCGCTCAGGACAAACGCCATTCGCTGTTGCTCTTAGAACTCGTGATCATGAAGCTGCCGGAGCCATCTTATCACGTGAACCAGGAGCTGCTGAACAGTTTGATTCAAAGGGGCGTAATTTCCTTCATTCAGCTGTGCACAACGTAGATGTGGAGACCGTGTTGTTTCTAATTGGTGTGTCAGCGGATGTTAATTCTAGAATCCAGGACTCCTCTCACAGGACGCCGCTACATTTGGCTGTGAACGCTGGTTCGGAAATAATTGTCAGGCACTTGCTCCTTGCTGGCAGCAGATTCAATGAAGTGGATAAACATCATCAAACTGCATTACATTTGGCCGCCGCTAACAACTCAGCCTCCATTCTTAGTATTCTGTTGGAAAATGGAGCGGAACCCGATACCGCAGACGATAAAGGAAATAACGCTTTGCACATAGCAGTGCAGTGTGGCCACGTGGAAGCCGTTCGTGTTCTTCTCACAGAGTCATCAATAAATGCGGAGGCTTACAATGCCCGAGGTCAGAATCCTCTTCACATTCTTGCACAATATGCCAAGGAGCATGCCGTAGCGATATTTAATCTTTTTCGCCAGTCCATGCCTGATTATCCCCTCAATGCATTGGATGCTGAGGAAAATACAGCCTTGTTTCTTGCGTACACAAATGGCGCGGCCAGATTATGCCGTGAACTTCTCAGAGCAGGTGCGAGCCTGAACACTATCAACAAACATGGAGTGTCAATCTTCAATGCACAAGTACCAACCAAGAAGCTTCTTTTCAACCTGCTCGATTTACTCAATGGTGAACCTCAGTGGATTGACGGACCTGTTTGTCATGACTGTGGAATAAAATTCTCCGTAACAACACGGAAACATCACTGCCGCCATTGTGGTCGTCTCCTGTGCGCAAAGTGTTCATCCAAGCAAATTCCCATCATAAAATATGACTTGAGTAAGCCTGTAAGGGTTTGTAATGTCTGCTTTGAAATGTTGACTTCTGGGCCAAGCTAA

Transcript

FUN_016137-T1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q810B6	Rabankyrin-5 OS=Mus musculus OX=10090 GN=Ankfy1 PE=1 SV=2
Q9P2R3	Rabankyrin-5 OS=Homo sapiens OX=9606 GN=ANKFY1 PE=1 SV=2
Q5BBK9	Vacuolar protein sorting-associated protein 27 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=vps27 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004266 (this species only)
Transcription factor family	ZBTB · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01363 all species →	FYVE	FYVE zinc finger	Domain	Interproscan
PF00023 all species →	Ank	Ankyrin repeat	Repeat	Interproscan
PF00651 all species →	BTB	BTB/POZ domain	Domain	Interproscan
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011333 all species →	Homologous_superfamily	SKP1/BTB/POZ domain superfamily	Interproscan
IPR000306 all species →	Domain	FYVE zinc finger	Interproscan
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR049765 all species →	Domain	Rabankyrin-5, BTB/POZ domain	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR000210 all species →	Domain	BTB/POZ domain	Interproscan
IPR049763 all species →	Domain	Rabankyrin-5,BTB and C-terminal Kelch domain	Interproscan
IPR017455 all species →	Domain	Zinc finger, FYVE-related	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR011011 all species →	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan
IPR049764 all species →	Domain	Rabankyrin-5, FYVE domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24118 all species →	POTE ANKYRIN DOMAIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20129	ANKFY1; rabankyrin-5	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.