Detailed information of FUN_016162-T1 in Siderastrea siderea

Genomic Location: contig_13:6501018...6501350
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF07883
all species →		Cupin_2Cupin domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR014710
all species →		Homologous_superfamilyRmlC-like jelly roll foldInterproscan
IPR011051
all species →		Homologous_superfamilyRmlC-like cupin domain superfamilyInterproscan
IPR052535
all species →		FamilyBacilysin biosynthesis H2HPP isomeraseInterproscan
IPR013096
all species →		DomainCupin 2, conserved barrelInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR40112
all species →		H2HPP ISOMERASEInterproscan

 Gene Ontology
No Gene Ontology signature was detected for FUN_016162-T1. This gene does have a gene model — the search simply returned no hit.
Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_016162-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_016162-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
7TPM > 0
7Conditions
58.3Max TPM
1.9Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 0 0.00 0.00
holobiont · low.pH Control.temp 20 1 2.92 58.31
holobiont · control.pH_high.temp 20 0 0.00 0.00
holobiont · control.pH Control.temp 19 0 0.00 0.00
Whole organism 4 4 12.32 16.97
unannotated 1 1 34.11 34.11
live coral tissue/skeleton 1 1 19.70 19.70

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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