Gene detail

Detailed information of FUN_016193-T1 in Acropora pulchra

Genomic Location: ptg000011l:215834...225463
NR annotation: XP_044174469.1, abnormal spindle-like microcephaly-associated protein homolog isoform X2 [Acropora millepora]
Species abbreviation APULC · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_016193-T1

ATGCATGCAGATTTTGGAATCAAGCGCCAAGTAGTGGACATGCTCCTTTCATACAATCCATTATGGCTAAGGATTGGTCTTGAGACCATATATGGAGAAATTCTTCCAATTCAGTCCAATTATGATGTAACAGGGCTGTCCCGTTTTCTGAGGGACCGATTGCTCAATAATCCAGATATTGCAGAAGCCTTTGTACATCCTCAGGTACCTGGGCTTTACAGAGAAGGTTATGTTGAACAGCTGGGAAAGTTTACCCTCAAAAAATTTCTCCTTCTTGTGTTGTTTCTGGATAGAGCAAAGTTGACTCGGTTAATTGACCATGCATATGATCCCTGTCTGTTTAAAAAAGAAGCTGCTTTTAAGTCAAATCGCAGCGTCCTGATTAGTTTCTCTAGAGAGTATCTCAAAGGAGAAGGAGACATTACAAAGCATCTGGGCTTTCTTGGTTATTCGGTTACGCACACACAGAAAGCAATTGATGAAGTTGATTATGCTGTATCTAATATTGCGACCGATCTTAGAGATGGTTTGCGTCTCACACGAGTAACGGAACTTTTGACGCAAGATTGGCAGCTGTCAGCAAGTCTCCGTGTTCCAGCCATCTCCAGGCTGCAGAAAATTCATAATGTAGATGTTTTCATGGAGGCTTTGAAGGCGAGAAGTGTACCCCTTGAAGAAATTGGAATTGATGCTCGTCACATTGTGGATGGACACAGAGAGAAGACATTGGCCCTGCTGTGGCAAATTATTTTTCATTTTCAGGTTAAAGTCTTGTTGAGTGAAAAACTCCTGAAAGTAGAAATTGCCCACTTGGAAAGTTCCAGGCAACTTCGCGATCAGTTGAACGCTGCTGAGAACTGGGTCGTAGATGACCCTTCTGATTTCCCAAGTAAACGGTGCGACTCATCTGAGTTGTTCTTCAAATCAGACCTGCTTCGATTGCTTTTTCGGTGGTGTAAGATAGCTTGCAGGCTTTACGGTATGAAGATCGAGAATTTCACAGTGTTGTTTTCAGATGGCCGTGCCCTTTGCTATCTGCTCCACCATTATCACCCTTCACTTCTCCCCGCGTCACTCATAAAGCAACAAACTAGCTTAACCTGCAATCCAGGGGTAAACAATGTAAGTGACAGTGAAGGAGAACAAGATGTAGCGCTGAACTCATGGATTACAACTTTAAGTCCAGGTTCTGGAACAAATTCCTTGAGGAACTAAAGGTAAATGAGCGCGAGAATTTTCGGATGGTAGGAGAAAAGGTGAAAGAACTAGGTGGCGTCCCTCTGATGACAAAAATCTCTGACATGTCTTGCACAATTCCTGACGAAAAGGTAGCTGAAGAATTGTGTGAATCTTTAAATTAGGATTTTTAAGCTAATCAAGCTGATCGATGATCTAGACGAAACTTTCTTTTTCTCTCTCTCTAGGTTGTTATAACGTATGTGGCGTATCTTTGTGCGCGTTTGTTGGATCTCAGAGAGAAGACTAGGGCTGCGTGCCTCATTCAGATGACGTGGCGGCGGTATCATCTCAAACGACAACTTCATTTCAAGAAGGTGAGAATCCTTTCGTATTTAATTTTTTTTTCAAAGCGATTCTTAAGGGTCAGTTTGTTTGTTTGTTATTGATTGATTTATTTATTAATTTTTTTTCCTACAGGCGCTTGAAAGAGTGATTGTTCGTGTCCAGGTAAGGAAAAGATGACTTGTATTTCCTGTTCCCGAAGATAGGACAAGTTACGGGGAGATATCATTTGATTTTCTGTGTCCAGTTGTTCAAACCCTGACTAAACTAATCCAGGATTCGCAGAAACGTTTGAAACCATTTACTTGCAAACCTAGGAAGATTGTCGTAAGATTTTGCTCCTTATGTTGTAAACCTGACCTTTATTTTCTGTCAAGTTTGAATTACATGGGTCGGACGTTCTAGACCAAAGAAATAAGGACCTTGTTTGTTGTTTAATTCTGAGTTAACGTTAAGGGTCTTTTAAACGACTGGGCTTTTAAGTGAGGAGGGGGTCGCAGAGGATGTACCAGTGGCGCGACAATGTTTCAACTTCGTTCCCAGAGTCCTATCTCCTGACCTTGGAAACGAGATAAAGGTTTCACGCACATTGATACGTCACCGAACACCCGCAATGCATTTCGCGAGCAATCTTACGAGTCGAAGGTTAATCAGCGCACTTCTCAGACCGTCGAGTTGCTCAATGAAGACGCAATTTCATTTCCCATTACCTTATCTA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P62297	Abnormal spindle-like microcephaly-associated protein homolog (Fragment) OS=Ovis aries OX=9940 GN=ASPM PE=2 SV=1
P62285	Abnormal spindle-like microcephaly-associated protein homolog (Fragment) OS=Bos taurus OX=9913 GN=ASPM PE=2 SV=1
P62289	Abnormal spindle-like microcephaly-associated protein homolog OS=Gorilla gorilla gorilla OX=9595 GN=ASPM PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003911 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00307 all species →	CH	Calponin homology (CH) domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001715 all species →	Domain	Calponin homology domain	Interproscan
IPR036872 all species →	Homologous_superfamily	CH domain superfamily	Interproscan
IPR051185 all species →	Family	Abnormal Spindle-like Microcephaly-associated	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22706 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000278 all species →	Biological Process	mitotic cell cycle	Interproscan
GO:0000922 all species →	Cellular Component	spindle pole	Interproscan
GO:0005516 all species →	Molecular Function	calmodulin binding	Interproscan
GO:0007051 all species →	Biological Process	spindle organization	Interproscan
GO:0051295 all species →	Biological Process	establishment of meiotic spindle localization	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_016193-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.