Gene detail

Detailed information of FUN_016236-T1 in Colpophyllia natans

Genomic Location: contig_26:1285155...1393657
NR annotation: CAH3116195.1, unnamed protein product [Pocillopora meandrina]

Gene Structure

More details in Jbrowse

Sequence

CDS

FUN_016236-T1

atgaaggaagatgCACCTGATGTTCCTGCCACCTTCAATCATACTAATGTAGCTCCAGACATGTCTCACGGCCCAAGAGTAAACCTTACCTGGAGTCAGCCAATAGAAGCGAATGGAATTATCAGGAATTACACATTGTTTTATGGTCACGAGAAAGATAAACGAAAAGAGACCTTTGGAAAAGATACATTAAGTCACTCAGTTGATGTATTGGGTGGTGTCACCTATCAGTTCCATGTTAGAGCTGTGACTATCAAACCTGGACAAAATGCTTCTTTAACTGTAAATGTCCAAGAGTATGAACCAAGCGTTGGTCCAGATAATGTTTTATCCTCTGAACTGAACAAGACGACCTTTAACATTTCTTGGGCACCTCTTACAAGGGAAAAGAGTTATGGTAAAGTTATCTTGTATGATGTCAAGGAAGAATTGCTGTCAAGAGGAAAACGTCGGAAAAGATCTCCTAACAGCAGCCGAAAATCAAATACAACCGCAACATTTGCTGTCCTGTTTGATTTGCTGCTTTGTTCCCGATACAATGTGTCTGTTAGAGCTTACACGAAAGCAGGTCCTGGACCCTATAGTCAACCTTTGGTATTGGAAACATCAAGGCCAGAACCTCCCTTGGATTTGAAGGAAAAAGATTCTGGAACAACAGATGTTAGCCTGGAATGGAAAGAACCGGATTTTACCATAAGAGGAGACACCAGTTACACAGTAAACTACAGTGGAACAAAGTGGTACAATAATAGTTTTAAAGATGTCAGCTCAAAAGAAGCAATAAAGTCAACAGTATATTCCGTTAAAAATCTGGTGCCAGGCTCTCAATATGTTTTCGAGGTTTATGCAACCTCTGTTTGCGGCAAAAGTTTATCCAAATATGTGAATGTAGAAACAGGAATTGAAGCTCCAATCGCCCCAGTTGTGCCTAATTTGACTGATGTGACTGTTACTGAGTCAGTCCTTGGAATTTATCTGTGGCCTGTGGAACAAAGGAATGGTCCAGTAAGtgcATATCAAGTTATAGTTCTGAAAGTTTTTGATGGAACAATAGAACTTCCAGATGATTATGATTCGCAACTGACAAATGCAAATGACACCGGCAAAGACAAGTTGAACTTTTACATTGCTGCTGAGATACGAATAAATGATTCAGTGTACGAGGAATCCTGGAAATTTACTATCGGGGATGACACCGCGCATGGAGGTTTTGTTAATAAAGCACTTgagagaggtgaagaatatatCATCTTTCAAAGAGCTGTGACTCGTGTCGAGGATATCTTTTTAACAGGAGAGGTCGGCAAAGTCGCCAGAATTGTTGTTGCTCCAGacGTTGGAGGAAAGGACAAAACTGAGGGTTCTGATTCGTTTAATCCTGCGTTTGTTGCTGTCCCTGTTGTCCTGTTGTTGCTTATTTTAACTGCACTTATTGTCGTAGTTTGGTATCGGAGGAAGAGACAgccacaaaagaaaaacaaacgtgACAGGACCCCTGTTCAACTGGATGACATTTCACGTTCCTCAGTTGGTGCCACTGCCACCTTAACTAATCCAGTTTATCAAAATGTGGCCGATATTCAACAGCATCATCAAGATGTTGTGGAAGCAACTTCCCCTGAAGAAAACGAAGTGATGTACAGTGAAGCAAAAGATAGTAAACCCAAACCAATCCCTGTGGCTGAGTTTGCGAGATACTTCAGGAACAAGTCTAGTAATGGAGCAATTGTTCTCCGAGAGGAATTTAGGAATTTACCGGCTGGTTTGGAGTTTCCTTGGGAAGTTGGCAAGAACAACCGAGTTAAAAACCGTTATGGAAACATTACTTCCTATGACCATTCTCGTGTTGTGTTGGAGCAAATAGGAGGTGACCCAAAGTCGGACTACATTAACGCTAGTTTTATGCCGACTTTTGATGAGGACACTATGCGCTACATTGCCACTCAAGgTCCTACCCAAGAGACGTTGACTGATTTTTGGCGAATGATCTGGCAAGAGAACTGTGCTACTATCGTAATGCTCACCAACCTGGTTGAGATGGGAAAGAAAAAGTGTGACCAATACTGGCCCGATAGTACTACCAAGCATGGCTCTATAACAGTCACTTTACAAGAGACTAAACATTTTGCTGATTACGTTGTACGAACATTTATTCTGGTGAAGGATTCAGAGAAACGTGAGGTCCTCCAGTTTCATTACGTCACTTGGCCCGACAAAGGTGTTCCAGAGCGATCCACAGCGTTACTGGGATTTAGGTGGAAGGTTCATGCTAGACACCAGGCTACAGGTGGACCACTTGTTGTGCACTGCAGTGCTGGTGTTGGACGAACTGGTACGTACATCGCCATTGACGCCATGTTGGAAGGTGCTACAGTCAAGAAGAGCGTGTCCATTCAGAATTATGTTCAAGTGATGCGGAGATGTCGTCCTTATATGGTGCAAAAGGAGGAACAGTATGTATTTTTGCATCAAGCAGTGATGGAAGCTTTGACTTGTGGAAATACAGAGATTTCCCCTCAGGACTTGAGAATTACAATTAACAAACTTGCCAGAACTAAGAAATCTTCGCAAACAAACGGATTTGCAAACGAGTTCAAGCGTCTAGAGCTCGTCAGTGTCTGTCAGTCATCAAGGAATGAATCCGAGGCAGGATTTAAACCTTCCAGCATCAAGAAAAACAGGTTTTCTAATATTGTACCACTGGATTCCTCTAGAGTGTTTTTGAGTTCTTCTGAACCAGAAAAAGATTACATTAACGCCTCTTTTGTTGACGACTACAAACAACGTGGAGCATACATACTGACTCAAGCGCCACTGGACAACACTGTTGAGGATTTCTGGTGCATGATCTTACAGTATGAAATTGGCACAATTGTGATGTTGAACAGcttgaaagaagaacaagagAATTATCCGCAATACTGGCCTACTGAAGGATCCGCACAATATGGTAGCATCACTTTACAGAAAATGTCGGAAAAAACTTCAAAGAACATCACGACTAGGATGTTTAGTGTGTCAAATGCAGAGCGTCCAAGAAAACAGTTATCTGTGTGGCACTTACACTTCAATGGATGGTCTAACCCTGACTCGTGCCCAGATCCTAAGGAAATACTCGACTTGCTGACTGCTATACAACAGTCTCAGCAACAAACAGGAAACGGTGTCATTGTTTTTCAGTGCAGcGATGGAGTTGGTCGCAGTGGCTGTGTGTCCTCAATAATGTCAGGGATTGAGCGAGTCAAGTCAGAACAAACAGTTGATGTGTTTCAAATTGTTAAACTGATTCGAGCCAGAAGACCTGGTGCTGTCGACACTCTGGATCGCTACGAGTTCTGTTACAAGACAATCCAAGCATATCTGGACTCTTTTAGCACTTACGCAAATTTTGCGGACTGTTAA

Transcript

FUN_016236-T1

Protein

Uniprot

Uniprot term	Description
Q64487	Receptor-type tyrosine-protein phosphatase delta OS=Mus musculus OX=10090 GN=Ptprd PE=1 SV=3
P23468	Receptor-type tyrosine-protein phosphatase delta OS=Homo sapiens OX=9606 GN=PTPRD PE=1 SV=2
Q99M80	Receptor-type tyrosine-protein phosphatase T OS=Mus musculus OX=10090 GN=Ptprt PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00041	fn3	Fibronectin type III domain	Domain	Interproscan
PF00102	Y_phosphatase	Protein-tyrosine phosphatase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003961	Domain	Fibronectin type III	Interproscan
IPR029021	Homologous_superfamily	Protein-tyrosine phosphatase-like	Interproscan
IPR000387	Domain	Tyrosine-specific protein phosphatases domain	Interproscan
IPR000242	Domain	Tyrosine-specific protein phosphatase, PTPase domain	Interproscan
IPR016130	Active_site	Protein-tyrosine phosphatase, active site	Interproscan
IPR050348	Family	Protein-Tyrosine Phosphatase	Interproscan
IPR036116	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR003595	Domain	Protein-tyrosine phosphatase, catalytic	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19134	RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0016311	Biological Process	dephosphorylation	Interproscan
GO:0004725	Molecular Function	protein tyrosine phosphatase activity	Interproscan
GO:0006470	Biological Process	protein dephosphorylation	Interproscan