Gene detail

Detailed information of FUN_016288-T1 in Acropora pulchra

Genomic Location: ptg000011l:1165470...1181114
NR annotation: XP_044171241.1, U4/U6.U5 tri-snRNP-associated protein 1-like isoform X1 [Acropora millepora]
Species abbreviation APULC · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_016288-T1

ATGGGGTCATCTAAAAAGCACAAAGAGAAGGATAAAGATAGAGAACGCAAAAGAGACAAGGAGCGCAAACACCGGGAAAAAGATGACAAAGATCGCGACAGAGATTCTGATAAAGAAAGAAGACGCAAAGAAGATAGAAGCAGGGACAAACGAAGCCACGGCGCATTGGATGTTGGCGAGAGAGTTGAAAAGAAAAAGGTTAAGAGAGAAGATTATGATGATCTATTTGAGTATGCTGTGGGAGAATCAGCGCAGGATGATAAGAGGGGCAGTCAAGATAATGGTGCGGTATCACAACAACAAGGAGACGTATCACTCAGTATACAGGAAACTAACAAATTGAGAATCAAACTTGGGCTTAAACCACTTGAAGTTCCTGAACCATCTGTGGAAAAAGAAGGAGAAAAGCCAGTTTCTCTGAAAGAAGATGTACATATCCCTGCCAAAAACATGTCTGATCAGAAAGAAACTGAAAATTTCAAAAGAAAATTAGAGGAAATGAGAGAAAAAAGAAGAATAAACAAAAAGTTGGGCAAAGTAAAAACCCTTGGGACCAAAGGCAGCGATGAGGAAGACAGTGCTGCATCATGGGTAGCCAAGAGCAGGAAAAAGGAAGAAGATAAGATTTTGGCTGAAAAACGAGCACAGTTATTGGCTGAAATGGATGAGGAGTTTGGAATCAGCAACTTAGTTGAAGAAGAGTTTGGATCCTTTTCAAGAAAAAGGCAACCTACTTACTTCAGCCAAGATTTAAGTGGATTAAAAGTTGAACACTCTCAAGAGCATTTTATGGAAGGAAATTCAACAATATTGACTTTAAAAGATGGCTCTGTTTTAGATGAAGAGGAGGATGCACTAATTAATGTAAATATTGTGGACAAAGAAAAGGGTGAAAAAAACATTGAGCTAAGCAAAAGGAAGCCTGACTACAGGCCTTATGATGAACCTGAGACAGATGAATTTGGAATGATCAAACCAAGGGGACTGTTGCAAAAGTATGATGAAGAAATTGATGGGGAAAAAAAGAAATCATTTGTTCTTGGTTCAGGAGGGACGTATGATACAACAAAAGAGGATGAGGTGAAAAAGATACAAGCCAAGCTGAAAGCACAAATGGTCTCACTAGAAATAGCCAAACCTCAACTGGCAGTAGAATATTACACTCAGGAGGAAATGGTCAAGTTTAAGAAACCCAAGAAGAAACGAAAAATCAAGAAGAGGGAAACCCTAAAGGCAGATGATCTTGAAGAACTGCCAGGTCAAACAGATTTGAGCAGTGATCGTGGATCAAGAAGTGTGAAGTCAATCCTGAAGAATGCACCAAGGAGACATGAAAGAGAAAAAGCTGATGATGATGATATGATGGAATTGGATCCTTTGGTTCCAGATGAAGAAGAACAAGTTGTGGATGATGGAGATCACTCTGTGATAGTTGAAGAAGATGAAGCTCAGCTGGAACTTCAGCTAGCATTAGAGAGATCTCGCCGATTAAAAAAGAAGAAAGAAGCAACTGGTGTAGAAAGGGTTCTTGAGACACTAGCAACTGTCGTGAAGCAAGAAAGTGATGATGAAAATGGCAAAAAAGATTCCATCATCTTAAACTCAACTTCAGAGTTTTGCCGCACGCTTGGAGAGATTCCAACTTTTAGTGCACCTGAGGAGCAAATGGAAGAAATTGAAGACGATAATGAGTGGCGTATGGATGTTGAGAGAGACGATGAAGTCGAGCCACATGGTGGCTGGGAATGGGTCAAAACTCAAGAGGAAAAAAGGAAAAAAGAAAGAGAAGAGGAAACAGAAAGTAGCATCCTCGAAGCTGAACCTTTGGTTGGAAAAGGCGTAGCCGCTGCTTTGTTTCTTGCGGGAAAGAAAGGTCTGTTAGAACAAACATCTAAAACAAAAATTGAAGGGAAAGTGCTTCCAGTCTTACCCTCCGTGGGTGTCGTGGATGAGGAAAAAATGCGAGAGGAAGAGAGAGAACGAGGCGTAAGATCATCAAGAGATTTCGACAGGGAACGAGACAGAGATCGTGATAGAGACAGATATGGTGGATCATCCAAGAACAAACAGGAGTACAAACCAGATGTGAAGCTTGAGTACTATGATGACAATGGTCGCTCGCTGACGCCGAAAGAGGCTTTTCGCTACTTGTCGCATAAGTTTCATGGTAAAGCATCGGGTAAGATGAAGTCAGAGAAAAGAAATAAGAAACGTCAGGATGAAGTGGCGCTTCAGAAGATGAACTCAGGGGATACGCCACTGAACTCTACCGCGCTACTCATAGAGAAACAGAAAAACGCCCAGTCCCCCTACGTCATCCTTAGCGGAGGAGGACAGACTTTCTCCACAGGGACCACCATCTCAAAAAAAAAATGA

Transcript

FUN_016288-T1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O43290	U4/U6.U5 tri-snRNP-associated protein 1 OS=Homo sapiens OX=9606 GN=SART1 PE=1 SV=1
Q9Z315	U4/U6.U5 tri-snRNP-associated protein 1 OS=Mus musculus OX=10090 GN=Sart1 PE=1 SV=1
Q5XIW8	U4/U6.U5 tri-snRNP-associated protein 1 OS=Rattus norvegicus OX=10116 GN=Sart1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004005 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF19252 all species →	HIND	HIND motif	Motif	Interproscan
PF03343 all species →	SART-1	SART-1 family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR045347 all species →	Conserved_site	HIND motif	Interproscan
IPR005011 all species →	Family	SNU66/SART1 family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14152 all species →	SQUAMOUS CELL CARCINOMA ANTIGEN RECOGNISED BY CYTOTOXIC T LYMPHOCYTES	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000398 all species →	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0046540 all species →	Cellular Component	U4/U6 x U5 tri-snRNP complex	Interproscan
GO:0000481 all species →	Biological Process	maturation of 5S rRNA	Interproscan
GO:0045292 all species →	Biological Process	mRNA cis splicing, via spliceosome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11984	SART1, HAF, SNU66; U4/U6.U5 tri-snRNP-associated protein 1	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.