Gene detail

Detailed information of FUN_016390-T1 in Acropora pulchra

Genomic Location: ptg000011l:2584372...2588455
NR annotation: XP_029211259.2, serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C-like [Acropora millepora]
Species abbreviation APULC · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_016390-T1

ATGGACACAGCGGAAACACGGTACATCAAAGTTAAAAGAGTTTATCTTAAGCCTCATCCGACCACCATCAACGAAAGTGAGAGCGTTTCGTTATTAGGCTCAAGTGATGCCATTGAGCAAAGAGCCAGCAAGGTTGTTGACGCTGTGTTTTCTGTATTTCAAATAACTGGGGACATAAACAAAACAAAGGAAGATTACAATGGCGATGGGATAAAAAACAAGAGAAAGATTTCTAGTCCTCTTTACACTTTCAGCCAAACTCGTGGATGTGAATGCGCTCAAAACGATACTTTTAATGCGAGAGACTATCGCGAAACGATTAGAACTATGAGCAGAAGTAGATCCATGGAATTTCCTTCAATGAATAGCAAACAACAAGGTGTAGATTTTTTACGTGAAGGGAGAGGTTACCCTATTCATTTGTCTTCAAAAAAATTTGGTTTGAAAATCCCTGAAAGTTGCTTGGTCGACCAAGACACGAAGAGAGATAACAGGCGTGTATCTCGTAAGGTGTCCTTCTGTAATCAGCCTCTGGTATATTCCGCTATATCACGTGATGATGTTGAAGAACTGAGCAATTTGATCGACAGCAGTGGACTGGATGTCAATCTCCCCGATGAGGCTGGCATAACTATGCTTCATCGCGCAGCCGTGGATGGAAGCAACCACTGTCTCAGTTTACTTATTTCTCGCGGTGCTCATGTTGACGTCGTTGATGACGATGGCTGGACGCCCCTTCACGACGCGGTCTTTCACGGGCAAGGCCGCTGTGCGTTTTATCTTCTTTCTGCGGGCGCTGACGTGGAGGCGGAGACGAATGATTTTCTTAAGCCAATTGAAATGGCCGAGAACGAAGACATGATCTTGATCGTTGGAAGAGCAATGGCTTTGAACGAGAAGACAAGTTTTGAGGAACAGAGGATCAACTCAGTGGAGGTGCTAACAAGCTCTATTGATACCTTTGTAAACATGACGCAGGCATTGCACAAGGCGTGCGAAGAAGGCAGTTTGCTCTTGGTGTCATTGTTGTTAGAGAGAGGGTTGAATGTGAACTCAAAAGACAAACAAGGAAGAACGCCGTTGCATATCGCCTCACAGACTGGAGACAGGCTGCTGGCGGAGTTGCTACACCAGCAAGGCGCAGATCTTTGTGCTGCGACATCGCAAGGAGAAATACCACTGAATTGTACCAAAGATGAAGAAATGACTTTGCTATTTGTACGTATGATGGCACGAGAAGGCAAAGCTCATCTTGCAAAAGAAAGATTGCAACTTGAAGAGATGTCGGATAAAGTCAAAGAAAAAATAACCAAAGGATTTGACTCAAAGACAACGCGCAAAAAAGCAAATCCATTATCTCAAATCTTGTCAAGGCGCACTCTTGTCAACCTCTTAAAGACGAAGGAGACGGCCTATCAACAGCTTTCTAGCCTGTCCAACGTGTCAGACTGTAGCAGATTCAGTGAAACAGAATCGGGTTTCGGTGAAACGGATAAATCTTCATGTGATTGTTCTACGGAGTCGGTGCTTTCAAACTTGTCAAATTCAAGCGGCTTCGCTTCTGTCGATGATCCTGCACCGCATTTTAACAGACGCGCAACGACCCCGCTCAGCAAACGGGAATTAACCGCGAGGAACCATCCCACGTCAAGGCCGCGTTCACGTTTTTCCTCCGAACCCCAGAAAGGGATAGTTCAAAGTGCTTCGACATGGAATATCGTTGGAATTTCCAGAAATCAATCATTTCCACCGTTGAAAAAGCGTGTTCCAAAACGCGTAACATTTCCAGCGGACGTTTTATTGGATATAGCAATCAAAAACGACGATTTCGTTGAAACTTGCCATCTGATAAAATCGGGCAGAGTTGACTTAAATCGTGTTGGTTGCAACGGTTTATCGCCGATACATCGCTCGGCAATCGATGGAAGTTACAAGTGTCTCCAACTTCTTCTCGATCTTGGAGCTGATGTAAACGTTCAAGATGAACTTGGATGGAGGCCATTACACGACGCGGTCTTCCACGGACACGTCCAATGCGCTATAGCCTTAATAAACGCTGGTGCAGACTTGTGTGCCCAAACAGACGATTTTTACACGGTTTTAGACTTGGCAGAAAATGATAGAATGCTCCTTGTCATTGGAAGAGCTTTGATGGCAAAGAACAATGACTATGATGCCGGGGAAATGACTTCATACTTAGGGAATGAAGTGTTTGAAAAGCTGTTTGATCCAGACAGGGAAACTTGTGTATGA

Transcript

FUN_016390-T1

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005613 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13637 all species →	Ank_4	Ankyrin repeats (many copies)	Repeat	Interproscan
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24171 all species →	ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_016390-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.