Gene detail

Detailed information of FUN_016439-T1 in Acropora pulchra

Genomic Location: ptg000011l:3098442...3102202
NR annotation: XP_015762842.1, PREDICTED: uncharacterized protein LOC107341880 [Acropora digitifera]
Species Acropora pulchra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_016439-T1

AGTAGTAACACTCGCGTCGCAAGAAAAGTGTTCTTTAGCATCACAGCAGCATTCCAGGGCAGGAAAGATATATGTTTAAGACTATTAAAATATGGCTGAAGGTGGTGGGTTTCCATGGTCTTCACGCCGTCGAAAATCTCGTCGCCGAGAAAGAGATAGGGACAGTATAGAAAACTCGAACGAAGAGATTGAAAGCGATCTTTTAAGAGTTGTCCTCAGTGATTCAGAAGACTTCGTTCCTGACGATGTAAAAAGTACAGCTTCTGTTGCTTGTAGTTGTGATTCAGACTTCCAAGATGAACAGGCAAGTCTCAATGTTTCTTGCGAGGACAAAAGTTCTCTTGATTTTGTCGATTTGGACCCAGAAGTTCGCCGCCGAGCGCAAATTCAGAGACTCAGTCGCTTCCCAAACAAAGTTACCCCACCGAAGCGCAGCAAATCGAGGAAGAGTCCTTCCGAAGAGATCTGTGGATCCGATCGAAGTGAGAGTGGTTTGGGCTATTATGGTCGCTGTCTTCAAGAAGCCAAACGCGCACGAAATAAGGCGGAAAAAGATGCGAAAAATCGGCGAATTCAGGACGAATCCAAGACACCCCGAAGGCGAAGGCCCCTTAGTATGGTGAGTTCCAGAACAGGAAACAACGACGCAGAGTTTTTCGAGACAAGGAGAAGGCGATTGTCGTTTTCGTGGGGCTTTCGAAGAGTATCCACGGATACAAATTTGGAAGACGCGGTGGAAGACCTGGATATTTCAGAAAATGGGGAAAACTTGCCGCGTTCGTCATCAACAGCTCTAAGAGCTCGTCAAGACAACCAATCGCAAAGTTCTGGTATGAATTTTGAGGAATTTCATCGACAGAAGAGGGAAAAAGCTCGTTTGAAAGCAGCACAACATCGATTGGAGTACTTTTTAATCAAGGACATCGTTTCCATAACGAACTGTCCATGGTATTGGGGAAAAATTAATAGGTTTCAAGCTGAGAAGATTCTAGAGGGCTACCCTGAGGGAACCTTTCTTTTGCGTGACAGTGCACAATATCACTATCTTTTCTCAGTGAGTTTTCGCCGATATCATCGTACTTATCATGCAAGGATCGAGCAGTGGAAACACAAGTACAGCTTTGACAAAGCCAGTGATTGTTCCTTTTATTCTACAAGTGTCTGTCAGCTATTGAGGCATTACGCTCGCGCCGAGCGATGCATGTATTATGAACCTCTTTTGATAACGCCATTGCAGAGGAAAGTGCCTGCATCTTTGCAAGAACACTGCCGCGCTGAAATCTGCAGCCGAACGACATTCCAAGGTGTTGACCATCTTCCTCTTCCGAACTCTTTGAAGCTTTTCTTGAGGGAATTTCACTACAAAGTTCCTGTGAAGAAAACCGAGGAAAAGAGTACGCAAACACCAATACCAAAAAAAAGATTTAGCTCTTTCTTTCATAGAGACTAGTTTTGATCCATTCTCAAGACTTAACTGAGGAATGCATTGCAGTATTTTGGATTTCACATTGAAAGGAAACTGACTCGCAAAAAAAAGTAGTCTACCATTGCATGGTATTCTGTTTTTCACCACATCAGACACTCAGCAAGTTTCTAAACTGCTTAGTTTTGGATTCTTTTTAGTGGTTTTGTCCAATTTGTTTTGTTCAAACTTAGTGGTTTTGTTTTCTATGGTTTTTAATGCCTTGTGTTTTTTTTTTCTTGGAGTTTTACAGGTTGTAAAATTCGGTTGGATATTTTTTCTTGTTGTTTCTGCATGCAGGACCGTGGCAGACCTCATAGATCAAATTATGTGTGATTCACGACCATTTGGGGTTTGTGAAATCAAATTGTTGTTCATTGATGTCCTGGAATACACTTATTAGATGCAAGCCCAGTGTTTTTAAAAACTGTTGGGTTAACGTTTTTTTTCTGTTGCAGTCCTTTTTCAAAATTAGTTCTAGCAGTGGTGGTTGAGTGTTCTTGAGGAGTAGAGATAGCAATACACATTTTAATGTCTGGCTTTCCTGTCATAAGCAATTTTGAAGTAGAGGAAAAGGATGAAGGGACACTTCATGATCCTTATTTATACAAGCATGCATGAGCTTGAGTGCATTTCTGGACATTGGCTGTCAGAACAATTTTGATATCCAATTTGAGGGTGCAAAGAACAAATTAACTTTTAAGGGGCAGTAACTTTATGAACATTAAATAGACCTACTATGGCATAATTTTTTTAAAGTTATTCACAAAACGTTTTTTAGATCATTCATGATAATTATTGCAATTATTGTTCCTTTTTTTTTGGCACTGGACCTGTTGTAGTTGGAATTCTAAGGAAATCGATGAAGAAATGGTTTCCTTAGTTTTTCAGAAAAATG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q0VC91	Suppressor of cytokine signaling 4 OS=Bos taurus OX=9913 GN=SOCS4 PE=2 SV=1
Q8WXH5	Suppressor of cytokine signaling 4 OS=Homo sapiens OX=9606 GN=SOCS4 PE=1 SV=1
Q5RDX2	Suppressor of cytokine signaling 4 OS=Pongo abelii OX=9601 GN=SOCS4 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009717 (this species only) · gene tree & orthology
Ubiquitin family	E3\|E3 adaptor Cullin RING\|SOCS · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00017 all species →	SH2	SH2 domain	Domain	Interproscan
PF07525 all species →	SOCS_box	SOCS box	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001496 all species →	Domain	SOCS box domain	Interproscan
IPR036860 all species →	Homologous_superfamily	SH2 domain superfamily	Interproscan
IPR036036 all species →	Homologous_superfamily	SOCS box-like domain superfamily	Interproscan
IPR000980 all species →	Domain	SH2 domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10155 all species →	PHOSPHATIDYLINOSITOL 3-KINASE REGULATORY SUBUNIT	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0035556 all species →	Biological Process	intracellular signal transduction	Interproscan
GO:0005942 all species →	Cellular Component	phosphatidylinositol 3-kinase complex	Interproscan
GO:0046854 all species →	Biological Process	phosphatidylinositol phosphate biosynthetic process	Interproscan
GO:0046935 all species →	Molecular Function	1-phosphatidylinositol-3-kinase regulator activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_016439-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.