Gene detail

Detailed information of FUN_016443-T2 in Acropora pulchra

Genomic Location: ptg000011l:3146664...3152174
NR annotation: XP_029211317.2, tubulin polyglutamylase complex subunit 1-like [Acropora millepora]
Species abbreviation APULC · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_016443-T2

ATGTCAAGTAAGCGACATCATGTGTAACTTGGGCCCAGACTTATTTATGATCCTGCGATGGCGGAGAAAAAGGCTTCGAAAACTACATTGTTAGAGGAACTGAAAGCAGATAAAACAGAAACCCCTCTAGATTTCTTGTTTAGAACTGGTGTCACAAATGAAATAAGAGATGCTATGACCCTTATCATTGAAAACAGACCTGAAGATCCTATATCTTTCCTGGCAGAATATTTTGACAACCATGCAAGCACCACTACTGCCATAATGCGAGCACAACAGAAACTGTTGTTAGTACATCATTCTCAGCCATCTTTTCAAAACAACCTTGGCCTTGCTTACAACATCCTCCGTCAAAGAAAAAATAATAATGGCCTTAAAGGGCTGACTGGAAAGACTTACAATGATCTGGTGGCAATGCTGTGCAGAGACCTGAATGTCACAGAGGCTGATCCTCTGCAAAAAAAGATCATGTGTTTGAGCCATGAGGTTGTACGTTTTCCTGTATTCAGGCTGGGAGTACTATCCACATTTGTCTATCAAGACTTTCTCAAACAAGCTGAGTCACTTCACAGTGAACTGGATTTGACTGAAAGAGGCAAAGCTGACAGACATCTTTGTGAAGTAATATTGAATGAGTTAAGGCAGGCAGTAAGCAAGACCACAGGTGACCCAATCAGTGTCATCCATGCAGGGTCCATGCTAAGTTCTCAAAGACTAAATAATGTCATGGCTGAAGCATTGATGAAGAATGGAGCCAGCAATGAGACAATGACTGTTGACGAGTTTGTTGTCTCAGCTGCAGAAATCTTGTTAGAACAGGTTTGACCAGTTTTTCTTTTCTTTGAAAATATACCTCTCAGATTGCTATTAACCCCTCACTCCCTTTCTTCTCTCCTGGCAGATACCTGATTTCAGATAACGCTTCCACAGATCTTTACTGTGCCTCAAAGAAGGATGACGAGTCTAGCACCATGGAGGGTTCTTGATATGGTTTGGTTCTCTGGACACCAGAAGCTATTCTTCCTGTGATGATCATTAATTATTGTTGTTGTTTTCACGGTTTGGGAGTGGCGAAGCACCACCAAGGGTAGGGTTGTGGTGTTCATTTAGAGTACCAGCATGGCCTGTGGTCCCCAGTTCGTGTGAAAGGCTTGGCAGTGTTGTCTCAAAGGACGTATGAGGTTACATACACCAAGTACCTACCGCCAACGCTGAAACAGCCGCTGATCAATAAGAGTAGGCTTTACGGGGTATTCAGGAAGAGGCAGATACAAGAACCGCTTGGCAAACGGGAGTCACAAGACGGAGAGGAAAAATTTAGAGGAAAGCTTCTTTTCACGTTGTTCCCTTCTGTTTCATTACATGACAGATGGAAAAGGCAAGGATGATATAACTTTATCGACAATCAACAAAGCTTTCATCAGTTGTGTGACAGAGGCACAGCTGAGCTTTGCCAATTCTCTCCTCATTGAAAACTAAAGTAAACAATAGAAGCTGTATTTGACAGCTTTAGTCAATTCTCCTCGTGTTAGTACAAAAACAAATGATGAATCGCATTTAATCAGATTTCGAGTCAACCACCAAAATCTGCTTAGGTTTATCTATATGTTTTTTAGCACTTTTTGAGGATCCTTTGCGGTGTTAGCAATATGAGTAATCTTTCAATCGACAGACATTCATCCTAAGCTAACGTTCGACATCTTTTTTTTGCGGGAAAGACCTCAGGTATGGTGGCTTATATTTTTCGTTTTTTTTCCAGTTTTGATTATTTTATTCTCAAAAACGTACATATTTTACTATGTTAATGCTGTAAGACGCACACCACCCGTAGTGGGCTTATACATGAGACCTCGACCCTTTTCTCAAACATGGTTCCATGAAAACGAAGTAGGAAGACAGATTCCAAACCCAGATATTCTGGGCTGAAACATGGTCTCAGATGCGCAATGGTACAAAAGAACTTCTATATTTCTCCCTGCACAAATAACACAGATTCACTGTCACCTCATTTCGGTGT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q99MS8	Tubulin polyglutamylase complex subunit 1 OS=Mus musculus OX=10090 GN=Tpgs1 PE=1 SV=1
Q6ZTW0	Tubulin polyglutamylase complex subunit 1 OS=Homo sapiens OX=9606 GN=TPGS1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006464 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05186 all species →	Dpy-30	Dpy-30 motif	Motif	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039235 all species →	Family	Tubulin polyglutamylase complex subunit 1	Interproscan
IPR007858 all species →	Conserved_site	Dpy-30 motif	Interproscan
IPR047502 all species →	Domain	Tubulin polyglutamylase complex subunit 1, dimerization/docking domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31932 all species →	TUBULIN POLYGLUTAMYLASE COMPLEX SUBUNIT 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008017 all species →	Molecular Function	microtubule binding	Interproscan
GO:0018095 all species →	Biological Process	protein polyglutamylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16581	TPGS1; tubulin polyglutamylase complex subunit 1	-	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.