Detailed information of FUN_016475-T1 in Acropora pulchra

Genomic Location: ptg000011l:3599764...3626356
NR annotation: XP_029202672.2, alsin-like [Acropora millepora]
Species abbreviation APULC · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q96Q42Alsin OS=Homo sapiens OX=9606 GN=ALS2 PE=1 SV=2
Q5BIW4Alsin OS=Pan troglodytes OX=9598 GN=ALS2 PE=2 SV=1
P0C5Y8Alsin OS=Rattus norvegicus OX=10116 GN=Als2 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002953 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00415
all species →
RCC1Regulator of chromosome condensation (RCC1) repeatRepeatInterproscan
PF02204
all species →
VPS9Vacuolar sorting protein 9 (VPS9) domainFamilyInterproscan
PF02493
all species →
MORNMORN repeatRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000408
all species →
RepeatRegulator of chromosome condensation, RCC1Interproscan
IPR009091
all species →
Homologous_superfamilyRegulator of chromosome condensation 1/beta-lactamase-inhibitor protein IIInterproscan
IPR011993
all species →
Homologous_superfamilyPH-like domain superfamilyInterproscan
IPR037191
all species →
Homologous_superfamilyVPS9 domain superfamilyInterproscan
IPR003123
all species →
DomainVPS9 domainInterproscan
IPR051984
all species →
FamilyAlsin GEFs and Motor Neuron RegulatorsInterproscan
IPR003409
all species →
RepeatMORN repeatInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46089
all species →
ALSIN HOMOLOGInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005085
all species →
Molecular Functionguanyl-nucleotide exchange factor activityInterproscan
GO:0005737
all species →
Cellular ComponentcytoplasmInterproscan
GO:0016197
all species →
Biological Processendosomal transportInterproscan
GO:0031267
all species →
Molecular Functionsmall GTPase bindingInterproscan
GO:0043087
all species →
Biological Processregulation of GTPase activityInterproscan
GO:0043231
all species →
Cellular Componentintracellular membrane-bounded organelleInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K04575ALS2; amyotrophic lateral sclerosis 2 protein-Chromosome and associated proteinsko03036deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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