Gene detail

Detailed information of FUN_016534-T1 in Colpophyllia natans

Genomic Location: contig_27:812172...825326
NR annotation: KAJ7376749.1, SH3 and PX domain-containing protein 2B [Desmophyllum pertusum]

Gene Structure

More details in Jbrowse

Sequence

CDS

FUN_016534-T1

ATGCAACGGAGAGCAATTCAAGAAGTTTCTGTTGAAGGCGCCCAGCGAAGAAAACCGAGCAATCGTATTGTGTATTCGTTCAAGGTTTCCTGGTCAGATGGAACTACAAACATCATTTATCGACGATACAGTGAAGTGCGTCAACTTGAGcgcAGTCTCCTGGAAAGATTTCCATGTAGTAAACGAGAGAGGGTCATTCCTTCACTTCAAGGGAGAATTAAGCTAGTACCAACAAGTGTGCATACGAAAGTTGACAGAATAAGAGACTTTCTCTTGAGTTTGAACTCTCTGCCTGATCATATTTCCAAGTGTCAACTGGTGATAACCTTTTTCACTCCCAAACCTGAAGATTTGGAGTCTGTTGAGCCAAAGACTCCAGGCAGTCGAAAAAAGTCCAAACGCAACACACCTGGAAGTATTCTTAGGAAGATTTCCTTAGGCAACTCAAAAACAGCAAGATATATTGGAGAGCCTGTGCTTTTGGAGCAATATGTCGTACTCGAGAATTATCGGAAACAATACCATAACGACATTAGTCTCACTAAAGGACATACAGTCGGAGTTCTTGAAAAGCACGAGAGTGGGTGGTGGCACGTGGATTGTGAGGGCGACCTTGGCTGGGTGCCAGCATCCTTCATCAAGCCTGTATATGGTGATAATGATAACAATGGTGAGAGGTTTCCCGCTGGAAAAGAAGAAATTTACATGACGACAAATTCTTACCAGGCCAAGAAGGAGGACGAAATCAGCTTTGATATAGGAGTAAATCTCCATGTGATAGAGAAAACTCTAGATGGATGGTGGAGAGTGGTATACATGAACGAAGAAGGCTGGGCTCCAGCTGTGTTCCTTAAGAGGGTTGGTGTCGCAACTGGTAACTCTCCAGCAATTTTAAAACGTTTGCCAATGATGAGTATGCAACTGAAAGACAAAGCAAGTGGCCCTGAAGAAACTTTAAAGACAACACTCCAAGGCGAGAAGTGTTCTCttttgacGCCTGTTTGGAACACATATAGGAGGCACAGCGCCAGTGAGGTATCTGAgttgaaaaaggaaagaaaggagAGGAAATTTCCAAGTCGTCGATCTACCTTGGGATCTACGGGAGTTCTTCGAGACGCTATAGCAAATCGGGGACTATCGATCTCGGAATGTGACCTTCGACTGGCAAATCAAAGAGAAGAAGAACCCAAAGCCCCTGAGACATTGAGACGAAATCGCTCCTTCAGTTTCCCCGACAACATGAAGGAAATTTTGGGGAAAAACAATGTGTCCGAAAATTTTCCCTCGGAAGGTGGCCAAACATCTGTAAATATTCCCTCTTCACGCCCGTTGAGATCGAGATCCTTTTCTGATAGTCCTGACCCTTCAAACATGGTTGCGGGTAGTAAAAGGTTGCTTAACTTGAGGGAATTCAGAGGTTCGCTTCCATCAATATGGATTACTCCCTCAGCCAGTGATGCAGAATATTCGCCTTCCTTGCCAAGGAAACTGGGCTCCTCACTGGGGGATGTTAAAAATACTGGAGGTAATCAATGTCGAAATTTGAACATTAATTCGCGAAGTCAGGAGAAAGTGACCGAAGAGGAGGAAAAGGACAACGGAAAACACCAGCCACAAGGAATAGTGAAGGAAGCCGATGTTATGTACCAGAGAAAGATCGTACCTTGTACTTCACAAATAAGTTTGAAAGATTTTCCAGCGATGGACACGCGGTTGATGGACGAGACAAGAGTCTTGGAGTTGGTTTTGAATACTGAGGTTCAAAATGGAGGGTCATCCGTTTTGACTCCTAGTCCCACACATCGGAGACACAGTACCAGTGAGCTTGGAGTACCTCCATTGAGGACAGAGAGCCAGAACAGCTTCTTCCATCGTTCCAATAGAGATCTTAGGGACGCACTTCCGAACCGCGGACTGTCTATCTCAGAACTTGATCTTCGAGTAGCAGTTCGTAACGAAGGAGAACGCATGGCCGGAGAGGTATTGAAGCAAAATCGTTCTTTCAGTCTTACCAGCAACATCAAGGATTTTTTGGGAAAAACCAATTCCACGGAAATTATGTCATCGAAAAATGTCCGTGCATCAAAGAAAAAGTCGAGTAAATTAAAGTACGTTGGGAGTGAAAAATCGCTGAGTGGGCGGAAATCGAGAGCTTCGCTGCCATCAATTTGTATCACACCTCCAGCGAGTGATACCGAACACTCTCCTCGCTTATCAAGAAATCTGGGCACCTTAACAGCGAATGTTCAGGCTCCTGGTGGAAATCAATTTATAACTAACAATGTCAATAAGCTGGAACCAGTGATAAACACAAGGGGACAAGAAAATAATCGATTTGGAACAGAAGAGCGGGAACCAAACGCATTTAACGAAAAAAAGTGCGTAACGAAACTAAAGAAACGGGAAGAAAATAAACAGCGAAAACAACAAGTCGGGGGCGACAACTTATGTTACTATAACGAAGAGGGCGTCCACCACGTACAAGATCAAAGAGAACGAGTTAGCCAAGCTGAAAAACATGGAATGGACAGAGAGAAAACTAGGAAAGAAGAGCTTGACAAAAGATTGTTTGATGAAGAAGAACAAGACAACTGTCACTCAATAATTTGCAGAGAAACAGATACCTACAGCTACTTTGTTGTTTGTACCTACGTAGCCAGTGGAGATGGTGAGATGACGGTGTACGAAGGAGATGAAGTTGAAGTGCTCAGTAAAGCTCCTAATGGATGGTGGATGGTCTGCATTGACGATGAAGTAGGATGGGTGCCTTCAAATTTTCTGGTCGCAGAAGGGGAACAGGAAGACGACGCCAATCAAGAAAGTCTGGAGTTAGAGGATGGTAAAAAGAATGCAAGGCTTTCTTCCGACGACTACGATGGTGATGACGATGAACGAGAGCACGAAGACGGTAGCAGACATGgagatgatgatgaagaagtgGAGGAGGAATGCTTTGACAACGTGTCTGGAATAGCCAATCCGAAAGATGAAGATCAATCGGTAATTTGGGCGCCGCCAGAcgaaaaaccaaaacaacaaaagaaaCGTGTTCATAGCAAGAGGTGCTATTACAGAGGATCACCACGGCTTAGCTGCAACGAGTGCTGGTTTCACCCTGCTATTAAGGGTCAAAACGTCATCCGACGGTCAAGTGGGACTTGGTCGAACAGCAGCACGGAGACCAACTCCTCCAACAGCGATAAGCAGGCCAGGTATGAGagaagaagaggaaagaaaagTGGAAAGAGTGCATTTATTAGCGACAAGCAAGCTTACAGCACAGAAAGAGGACTTACCATGCTACACCCCAAAAGAGCACCTAGCAGTAGCAAGGAAGCAGCATGCAGACAACAAAAATGGCACAAACGATTTGAGGGGATGAGTGGTGCTGGTTGTCTGTCAAGGGAGCAACGTTCCCTCTTCACAAGGAGCCACAGAAGGCCACTAGCAAAACATAAACATTTAGTGTCCTATGATTCTGGGTTTCCCGAAGATGAGAGGACAAACGCTGTTCGGAGGATGAGAAAATCCTTGTCGCTGCCTGATGCAAGAGCGAATCAACACAAATGGCTGTCACATTCTGCTTCAAACAGGCCTTACCACTCACAATTTGATGACGGCTACCCTCTTAGCAATCTGCCGGAGCATAGGCGTGACATAGCGCCTTTAAATGCATTTCATGGAGATTACTCGTCCGATGGTGAGGTGTTTCAAAAGACAAAGCATCCCAGTCTATACGAAGATTCATCTTATTATGATTTGGCAGTTCACTCGTATACCCGGCGgccaagaaagaaaataaatcgAAGTCAGTTGCCCAAAACCTCAAGTCAGAGAGATGCTCCTCGTGTCCGAAAACGCTCCGGCGGTCAGAGTTCAAAATTGGCTTATAAAGCCATTGCTTCTTACCGGGCTTCAACGGCCGACACAATCGATCTGCATGAGGGGGACAAAGTTCGAGTCATTCTGAAAAGTAGAGGAGAATGGTGGTTTGTGAAAATTGACGACGAAGAGGGATGGGCACCTTCTAACTATCTTGTACCAATCACGTGCTTTGATGAATGA

Transcript

FUN_016534-T1

Protein

Uniprot

Gene family

Uniprot term	Description
Q5TCZ1	SH3 and PX domain-containing protein 2A OS=Homo sapiens OX=9606 GN=SH3PXD2A PE=1 SV=1
O89032	SH3 and PX domain-containing protein 2A OS=Mus musculus OX=10090 GN=Sh3pxd2a PE=1 SV=2
A2AAY5	SH3 and PX domain-containing protein 2B OS=Mus musculus OX=10090 GN=Sh3pxd2b PE=1 SV=1

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|SH3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07653	SH3_2	Variant SH3 domain	Domain	Interproscan
PF00787	PX	PX domain	Domain	Interproscan
PF00018	SH3_1	SH3 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036028	Homologous_superfamily	SH3-like domain superfamily	Interproscan
IPR001452	Domain	SH3 domain	Interproscan
IPR051228	Family	NADPH Oxidase and PX Domain-Containing	Interproscan
IPR036871	Homologous_superfamily	PX domain superfamily	Interproscan
IPR001683	Domain	Phox homology	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15706	SH3 MULTIPLE DOMAIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0035091	Molecular Function	phosphatidylinositol binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K24032	SH3PXD2; SH3 and PX domain-containing protein 2	-	Membrane trafficking	ko04131	deepkoala