Detailed information of FUN_016570-T1 in Siderastrea siderea

Genomic Location: contig_13:12069175...12084328
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF10034
all species →		Dpy19Q-cell neuroblast polarisationFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR047462
all species →		FamilyC-mannosyltransferase Dpy19Interproscan
IPR018732
all species →		FamilyDpy-19/Dpy-19-likeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR31488
all species →		DPY-19-LIKE 1, LIKE (H. SAPIENS)Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000030
all species →		Molecular Functionmannosyltransferase activityInterproscan
GO:0018406
all species →		Biological Processprotein C-linked glycosylation via 2'-alpha-mannosyl-L-tryptophanInterproscan
GO:0005637
all species →		Cellular Componentnuclear inner membraneInterproscan
GO:0016020
all species →		Cellular ComponentmembraneInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K24553DPY19L; C-mannosyltransferase DPY19LEC:2.4.1.-
Glycosyltransferasesko01003deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_016570-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
69TPM > 0
7Conditions
371.9Max TPM
153.4Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 17 179.48 371.86
holobiont · low.pH Control.temp 20 16 134.02 315.22
holobiont · control.pH_high.temp 20 16 179.58 370.06
holobiont · control.pH Control.temp 19 14 162.68 370.37
Whole organism 4 4 13.23 14.43
unannotated 1 1 17.20 17.20
live coral tissue/skeleton 1 1 14.64 14.64

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

TOP