Gene detail

Detailed information of FUN_016584-T1 in Acropora pulchra

Genomic Location: ptg000011l:4998321...5009059
NR annotation: XP_044168683.1, flap endonuclease GEN homolog 1-like isoform X1 [Acropora millepora]
Species abbreviation APULC · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q17RS7	Flap endonuclease GEN homolog 1 OS=Homo sapiens OX=9606 GN=GEN1 PE=1 SV=2
Q8BMI4	Flap endonuclease GEN homolog 1 OS=Mus musculus OX=10090 GN=Gen1 PE=1 SV=2
Q8W5R1	Single-strand DNA endonuclease 1 OS=Oryza sativa subsp. japonica OX=39947 GN=SEND1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002363 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00867 all species →	XPG_I	XPG I-region	Family	Interproscan
PF18704 all species →	Chromo_2	Chromatin organization modifier domain 2	Domain	Interproscan
PF00752 all species →	XPG_N	XPG N-terminal domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006085 all species →	Domain	XPG, N-terminal	Interproscan
IPR008918 all species →	Conserved_site	Helix-hairpin-helix motif, class 2	Interproscan
IPR006086 all species →	Domain	XPG-I domain	Interproscan
IPR041012 all species →	Domain	Flap endonuclease GEN, chromatin organization modifier domain	Interproscan
IPR006084 all species →	Family	XPG/Rad2 endonuclease	Interproscan
IPR036279 all species →	Homologous_superfamily	5'-3' exonuclease, C-terminal domain superfamily	Interproscan
IPR029060 all species →	Homologous_superfamily	PIN-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11081 all species →	FLAP ENDONUCLEASE FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004518 all species →	Molecular Function	nuclease activity	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0000400 all species →	Molecular Function	four-way junction DNA binding	Interproscan
GO:0017108 all species →	Molecular Function	5'-flap endonuclease activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15338	GEN1, YEN1; holliday junction resolvase GEN1/YEN1	EC:3.1.-.-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.