Detailed information of FUN_016587-T1 in Acropora pulchra

Genomic Location: ptg000011l:5040881...5051087
NR annotation: XP_044168746.1, uncharacterized protein LOC114970498 [Acropora millepora]
Species abbreviation APULC · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q92900Regulator of nonsense transcripts 1 OS=Homo sapiens OX=9606 GN=UPF1 PE=1 SV=2
Q9EPU0Regulator of nonsense transcripts 1 OS=Mus musculus OX=10090 GN=Upf1 PE=1 SV=2
F1RCY6Regulator of nonsense transcripts 1 OS=Danio rerio OX=7955 GN=upf1 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0007661 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13086
all species →		AAA_11AAA domainDomainInterproscan
PF05183
all species →		RdRPRNA dependent RNA polymeraseFamilyInterproscan
PF13087
all species →		AAA_12AAA domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR047187
all species →		DomainUpf1-like, C-terminal helicase domainInterproscan
IPR041677
all species →		DomainDNA2/NAM7 helicase, helicase domainInterproscan
IPR027417
all species →		Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR007855
all species →		FamilyRNA-dependent RNA polymerase, eukaryotic-typeInterproscan
IPR041679
all species →		DomainDNA2/NAM7 helicase-like, C-terminalInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR23079
all species →		RNA-DEPENDENT RNA POLYMERASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0004386
all species →		Molecular Functionhelicase activityInterproscan
GO:0003968
all species →		Molecular FunctionRNA-dependent RNA polymerase activityInterproscan
GO:0030422
all species →		Biological ProcesssiRNA processingInterproscan
GO:0031380
all species →		Cellular Componentnuclear RNA-directed RNA polymerase complexInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_016587-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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