Genomic Location: contig_13:12924586...12949886
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families
| CDS |
| FUN_016630-T1 |
| Transcript |
| FUN_016630-T1 |
| Protein |
| FUN_016630-T1 |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00586 all species → | AIRS | AIR synthase related protein, N-terminal domain | Domain | Interproscan |
| PF02769 all species → | AIRS_C | AIR synthase related protein, C-terminal domain | Domain | Interproscan |
| PF02844 all species → | GARS_N | Phosphoribosylglycinamide synthetase, N domain | Domain | Interproscan |
| PF00551 all species → | Formyl_trans_N | Formyl transferase | Domain | Interproscan |
| PF02843 all species → | GARS_C | Phosphoribosylglycinamide synthetase, C domain | Domain | Interproscan |
| PF01071 all species → | GARS_A | Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR020560 all species → | Domain | Phosphoribosylglycinamide synthetase, C-domain | Interproscan |
| IPR004607 all species → | Family | Phosphoribosylglycinamide formyltransferase | Interproscan |
| IPR004733 all species → | Family | Phosphoribosylformylglycinamidine cyclo-ligase | Interproscan |
| IPR016188 all species → | Domain | PurM-like, N-terminal domain | Interproscan |
| IPR010918 all species → | Domain | PurM-like, C-terminal domain | Interproscan |
| IPR000115 all species → | Family | Phosphoribosylglycinamide synthetase | Interproscan |
| IPR013815 all species → | Homologous_superfamily | ATP-grasp fold, subdomain 1 | Interproscan |
| IPR020562 all species → | Domain | Phosphoribosylglycinamide synthetase, N-terminal | Interproscan |
| IPR016185 all species → | Homologous_superfamily | Pre-ATP-grasp domain superfamily | Interproscan |
| IPR036477 all species → | Homologous_superfamily | Formyl transferase, N-terminal domain superfamily | Interproscan |
| IPR002376 all species → | Domain | Formyl transferase, N-terminal | Interproscan |
| IPR020559 all species → | Conserved_site | Phosphoribosylglycinamide synthetase, conserved site | Interproscan |
| IPR011761 all species → | Domain | ATP-grasp fold | Interproscan |
| IPR036921 all species → | Homologous_superfamily | PurM-like, N-terminal domain superfamily | Interproscan |
| IPR001555 all species → | Active_site | Phosphoribosylglycinamide formyltransferase, active site | Interproscan |
| IPR037123 all species → | Homologous_superfamily | Phosphoribosylglycinamide synthetase, C-domain superfamily | Interproscan |
| IPR036676 all species → | Homologous_superfamily | PurM-like, C-terminal domain superfamily | Interproscan |
| IPR020561 all species → | Domain | Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain | Interproscan |
| IPR011054 all species → | Homologous_superfamily | Rudiment single hybrid motif | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10520 all species → | TRIFUNCTIONAL PURINE BIOSYNTHETIC PROTEIN ADENOSINE-3-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0004637 all species → | Molecular Function | phosphoribosylamine-glycine ligase activity | Interproscan |
| GO:0009113 all species → | Biological Process | purine nucleobase biosynthetic process | Interproscan |
| GO:0004644 all species → | Molecular Function | phosphoribosylglycinamide formyltransferase activity | Interproscan |
| GO:0006189 all species → | Biological Process | 'de novo' IMP biosynthetic process | Interproscan |
| GO:0004641 all species → | Molecular Function | phosphoribosylformylglycinamidine cyclo-ligase activity | Interproscan |
| GO:0005524 all species → | Molecular Function | ATP binding | Interproscan |
| GO:0009058 all species → | Biological Process | biosynthetic process | Interproscan |
| GO:0046872 all species → | Molecular Function | metal ion binding | Interproscan |
| GO:0005829 all species → | Cellular Component | cytosol | Interproscan |
| GO:0006164 all species → | Biological Process | purine nucleotide biosynthetic process | Interproscan |
| GO:0046084 all species → | Biological Process | adenine biosynthetic process | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K11787 | GART; phosphoribosylamine--glycine ligase / phosphoribosylglycinamide formyltransferase / phosphoribosylformylglycinamidine cyclo-ligase | EC:6.3.4.13 EC:2.1.2.2 EC:6.3.3.1 | Antifolate resistance | ko01523 | deepkoala |
Transcript abundance of FUN_016630-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| holobiont · low.pH_high.temp | 20 | 2 | 7.50 | 133.26 | |
| holobiont · low.pH Control.temp | 20 | 1 | 2.37 | 47.48 | |
| holobiont · control.pH_high.temp | 20 | 2 | 4.74 | 73.53 | |
| holobiont · control.pH Control.temp | 19 | 4 | 4.94 | 57.34 | |
| Whole organism | 4 | 4 | 12.41 | 14.14 | |
| unannotated | 1 | 1 | 8.61 | 8.61 | |
| live coral tissue/skeleton | 1 | 1 | 10.57 | 10.57 |
Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM,
StringTie quantification over 85 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
