Gene detail

Detailed information of FUN_016653-T1 in Acropora pulchra

Genomic Location: ptg000011l:5903512...5955646
NR annotation: XP_044183819.1, armadillo repeat-containing protein 8-like isoform X2 [Acropora millepora]
Species Acropora pulchra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_016653-T1

GTGACCGTACTCAGCGAATCGGACGAAAAAGGAAGGTTAAAGAATTCAAAAAAGTTAATCCATTCATCATGAAAATGCCAGTGTTTACGGAGCCGGACACAGATGAGATTTTTGTCAACAATCTTTCTTCACCGGATCAAGATGACAGACTCCAAGCTGTAACGAATATCAAAAACACCGTCATTGGCAACAAAGCCAAAAAGTTGTCATTTATAAGGCTCAACGTCATTCCAAAGATCATTGAACTCTTGTCACAAGATGACACTAGTGTGGATTTTGTGGTGGAATCAATTGTACTACTAGGAAGTTTGGCCAGAGGTTCTACAGACAGTGTTCAAGCTTTGTTAGAGGCCCGTTCATTGAATGTCTTCTTGAAAGGCATTTGTCATTCGGATCCAAGAGTGGTTGAAGCCTCTGTTCGTTCACTTAGGACTCTAAACTCTTCTCCACTCACCCCATCTGCTCCCATCTTTGATGATTCCCTCATTATTCCAAAGTTAGTTGAACTACTCTCAAGTTCATTCTCCAATGCTGAGTGCGCAGCATCTGTTCTCTCCAAATGCTGCCAGGGTCCAGAACATCAAGCACTCTTGTGTAACATGGGAGCAGTAAATGCTCTGATGCCACTGTTGGTGTGTGACCTTCCTAAAATACAACTACCAGCCTTACTGTGCTACGCTACAATGTCGTTTCAAAATGGAGCTGTATCACTGGCTATGAAATCAGCCTCACATCAAGGTCAGAATCTAATCCAAATCTTTACCAAGCTGCTCTCAAGAGATAGACCAGAAGAAATTCAGCTAGGAGCTGCTAAATGTCTCACAAACATGCACAGAGCCGGAGCTATTTCAGGGCAAGAAAATCGTCCGCTCTTAATCAAGATCCTCGCCACAGCTGTAAGAATGTGTAAATGGGACAAAAGTCTCACTGTCAGAGTGGAAGCAGCAGAAACTTTAGCATTCCTCATTGAAGAAGATACAGACCTTCAAAGGACCGCCGCCATCTCTGATCACTTGATAAAAACACTAACAGGTTTCTTGGTCAAGAATGGCTTGGATGATAGTTCCTACGCTCTTATGAGGGAGAGCGCCTTCAAAGCTCTGGCCTCTGTCGGAGCGAATGATGAAGATATCAGGAAAAAGATAATAGACATCGAGTGTACAATGGACCACGTTGTATCGGGGCTGGAAGACCCCAATACTAACGTCAAGTTAGCAGCGGTCAAGTGTCTCCACAGTCTTTCGCGTTCTGTACAACAATTGAGGACTAGTTTCCAGGAGACGGCAGTTTGGAAGCCGATTATGAAGCTTCTTCAAGATGCCTCTGACAATATGCTGACTGTGGCCTCGTCTGCCCTCTGCAATTTGCTGTTGGAGTTTTCTCCCAGTAAAGAGCCTATATTGGAGGCAGGCGCCGTCAATTTACTTTCAAATTTGACCAGGCGACAGGAGACAGCTCTTAGGCTCAATGGTGTATGGGCACTAATGAATATGGCATATCAAGCAGATGACGTAACCAAAAACAAAATTCTTGAAGTGCTTGGACCAGACCAGTTGTTTAGCCTTCTGGATGATCCTGACACGCAAGTCACAATGAAAACACTTGGACTGATGAGGAATCTTTTATCAGGAAGAGAGGATATTGACCGAATCATGCTGATTCACGGTTCTCGTGTCATGGAAAGTGTCAAACCCATACTGGACGGCGAAACACGCACTGAAGACGTCAAAGAACAGGCGTTGTGCGTGATCGCTAACATCGCCAACGGTTCGTCAGCCAAGGAATTTGTGATGAGAGACGAAAGTCTCCTGAAAAGACTCATGCAGTACATGATGAACGACAGTGTAAAGCTACAAATGGCAGCTACATACTGCGTGTCCAACCTTGTATGGAGTACAGAGGATGGTGCAGTGGGGAGGCAACAGAAGCTCAGAGATCTTGGTGTACAGAAACTCTTACAGTCTCTATTAACGACGTCTGACGTTAATTTGTTTGAAAGAGTGAAGACTGCTTTGCAACAGTTCACGTGACCCTTTCCTTTTTTCTCTGAGAAACACGTTAGTACTCTAT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q2KI54	Armadillo repeat-containing protein 8 OS=Bos taurus OX=9913 GN=ARMC8 PE=2 SV=1
Q05AL1	Armadillo repeat-containing protein 8 OS=Danio rerio OX=7955 GN=armc8 PE=2 SV=1
Q9DBR3	Armadillo repeat-containing protein 8 OS=Mus musculus OX=10090 GN=Armc8 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002851 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02985 all species →	HEAT	HEAT repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR000225 all species →	Repeat	Armadillo	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR000357 all species →	Repeat	HEAT repeat	Interproscan
IPR038739 all species →	Family	Armadillo-type fold containing protein ARMC8/Vid28	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15651 all species →	ARMADILLO REPEAT-CONTAINING PROTEIN 8	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0034657 all species →	Cellular Component	GID complex	Interproscan
GO:0043161 all species →	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23336	ARMC8; armadillo repeat-containing protein 8	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.