Gene detail

Detailed information of FUN_016751-T1 in Colpophyllia natans

Genomic Location: contig_27:3147227...3158946
NR annotation: XP_020614183.1, cell division cycle protein 23 homolog [Orbicella faveolata]
Species abbreviation CNATA · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_016751-T1

GGTTtttgaaaacaagatggcggccgtGTCGAATGTTTGTCTGCCAGAGATCAAACGGGATCTTCTTTACGCGGTGAAAGAATGTTCAGAGAGAGGATTGCTTCACAGTGCTAAATGGTCTGCAGAGTTGGCCTTTTCAATTCCATCTTTCCCATCTTCTGAGCATCTTCCAAAAACTGATTATTATGATGCACAATTTGTGAAAGACTTTGATAGATATACTTTAGGGAAAACTTTCTTTGATCTTAAAGAGTTTGACAGAGCAGCTTTCTTCCTGGATGGTTGCACCAGTCACAAGGCATACTTCTTGTATGTGTATTCACGTTACTTGGCTGGTGAGAAACATAAGAATGATAACATGATGGATGTTTTAGGCCCTCAAGAAAAAGTGCAGAACAAGGCTCTGACTTCCTTAAGAGCTGAACTGTATAAGAAACACAAAGAACTGGATGGATTCTGTCTTTACTTGTATGGTGTTATCCTTAAGAAACTTGATTTGAGAGATGATGCCTTAGAAGTGATGCAAGAAGCGGTGACTAAAGAACCACTTCACTGGGGTGCGTGGTTGGAGCTTTCATCTCTTTGTTCTGACAAGGAAGTTCTTCAATCTCTGACCCTCCCCTCCCACTGGATGTCTCAATTTTTCCAAGCAAATGTTGCCATTGATCTTCAGTTAAATGAAGAGGGCTTGGAAAGGTATGCCAATCTCAGTCAGGCTGGATTTTCAGAAAACAAGTACATCTTACTCCAGACTGCTTTAGTGCAGTACCATGCCAGAGATTTTGATGCAGCATGTGAGTTATTCAAGGAAGTACAAAAGAGAGATCCATATTCTCTTGAGCACATGGACACATACTCAAATATTCTTTATGTCAAGgaaatgAAGCCCGAGCTTAGTTACTTAGCACATCACACAAACAGCATTGACAAGTACAGAGAAGAAACATGTTGTGTCATAGGAAATTACTACAGCCTTCATGACCAACATGAGAAGGCAGTGACCTACTTCCAACGTGCACTCAAACTGAACCCACAATACACATCTGCATGGACTCTGATGGGACATGAATTCATGGAGAGAAAAAACACATCAGCTGCTATAGAGGCATACAGAAAAGCCATAGAGGTAAATTACAGAGACTACAGAGCCTGGTATGGACTAGGACAGACATATGAAATCCTGAAGATGCCATTTTACTGTTTGTATTACTACAGACAGGCTCACAAATTCAGGCCAAATGACTCAAGAATGTTAGTTGCTTTGGGTGAAAGTTATGAAAAATTGGACAGCATGCAACATGCCAAAAAGTGCTATTTTAGAGCAATGTCAGTTGGTGATTTGGAAGGAATGGCTGTTATCAAGCTGGCAAGATTGCATGAGCAACTTCAAGAAGATGATGATGCAGCCATTCAATACAACCGCTACGTGGAGCAGACAGAGGTTGTTGGGatactATCAGTCACTGATCTGTGTTCTGCGTACCTATTTCTGGCCAAATACAACTTGAAGAAACGAAATCTTGAAGCTGCTGAAATGTACGCTCACAAATGTTGTGAATTTAATGAGGGCAGAGAAGAGGGAAAAGGCCTTCTTCGGCAGATTTCTAACAGCAGGTCAATTGGGGAAAGTGAGAGGGAAAGTTCTGATGTTTTTACTCAAGAATTGTCACTTGGAGATTTAACTGCTGACCATGAAACAGTGATGTCTCCAGTAGCACCAACAAATCTAGATTTCAACACACCATAGTTGATAGCTTGTGAAGCTGTCAACTTATGATACAATTTATAGCAGACATAGCTGGCTCTGTATGCACTCATTTCTTCCACCACTTGGCAGACATCTTAGACTCCACCTGCTAAATTGAATGTTCTGAGCAGACAGCTCTACAGGGCACTTTGTAGCTGAGTTCTTTTTGAGTGTGAGACTGTATACTGAGGATGTGGTCTTTTAAGCTGCAGAACAGTCTCTGATCAGAGCCATATTTCCACTTAAGATTATATCACAGCTAATAATCAACTATGCAGTCAATGAGAATGCTAGAAATGATCTACATGTCATCAGGAGGAAAAATGTTCTTTAGTTGGTAAAGGGGCATGtgcataaaatgtttttacaaTGTAAAAGAGAATTAGTGTAAGACAAGTCAAGAAATTCAACAAGAAGTCAACCACTGGTGCTTTTCTGGACAGTACTGAAAAAGCCTCCACAAGGGACATCATTTGATTACAATTGCTCCTGAAGACACAAAACTAGCACGTACAGTAGATCCTCTCTACAAGGGCCACCTTGTCAACAGGGTAGGGTGGCCGTTGAAGAGAGGACTGGCATTATGGGGAGGTAGGGATGGGGGTGTACTATGAAACCTTTTTGGGGGTGCAACAGTTTTTTTCAACAAGTGCTTTTTTAAGCCTATATAAATCAAAATgtatcaataaaacagaaactgaACAGTAACAGAGACCAACGAAGTGTGGTATGGATCAAGTTAACAAAATAGGGTTTTGTATACCCTGTTCCTCAGTTGAGGAAGACGTTGTTGAGGATTTTTAGTACTTGTAGTCAGATCTGAAGGTCCCTATTTGGAAGTTGGGATGAGTTTTAGTaactgttgctgttgttgagaGTTTGAAATAAAGGTGAATGTCATGGACTGTCTGCTGAGACAAAGAAAGAGTGGCAGTTGTTGAAAGGTGGCCATTAGTGGAGGTTTGACTCTATCTTTGCAAAGTGCTGCTGTATAGCTGGTACACTCGGTGAGTTGCATGGCAGTTGGGGTGGGAAGTACTGGCAATAATTATGGTACTGTCAAAGATGCATATATGAACCTTTTGGGATTACGAATTGCAGTGTTAGCACCATAGATGGCGGTTGTCAATGTACATAGTTGGCAATGAGaataaaacaccaaagagaACAAAGAGATTTGGTGTACCCTGAAAATATTCTCTTTGAGTTTAATAGAACAACATCTTCACTACACACCATTTCACACAGAACTAATAACAATAGCAATaatctttattattattcaacaaattgtaacactgtccaaatatggtcatgattctctcaatatctgcaattctgggtaacagatatcctgtgatatacgtaattttgtacgccgcaacaagttaaactgtaaataaaagagtttttttcctg

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A1A4R8	Cell division cycle protein 23 homolog OS=Bos taurus OX=9913 GN=CDC23 PE=2 SV=1
Q9UJX2	Cell division cycle protein 23 homolog OS=Homo sapiens OX=9606 GN=CDC23 PE=1 SV=3
Q8BGZ4	Cell division cycle protein 23 homolog OS=Mus musculus OX=10090 GN=Cdc23 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005769 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13414 all species →	TPR_11	TPR repeat	Repeat	Interproscan
PF13181 all species →	TPR_8	Tetratricopeptide repeat	Repeat	Interproscan
PF04049 all species →	ANAPC8	Anaphase promoting complex subunit 8 / Cdc23	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR007192 all species →	Domain	Cdc23	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12558 all species →	CELL DIVISION CYCLE 16,23,27	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005680 all species →	Cellular Component	anaphase-promoting complex	Interproscan
GO:0016567 all species →	Biological Process	protein ubiquitination	Interproscan
GO:0031145 all species →	Biological Process	anaphase-promoting complex-dependent catabolic process	Interproscan
GO:0045842 all species →	Biological Process	positive regulation of mitotic metaphase/anaphase transition	Interproscan
GO:0051301 all species →	Biological Process	cell division	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03355	APC8, CDC23; anaphase-promoting complex subunit 8	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.