Detailed information of FUN_016767-T1 in Siderastrea siderea

Genomic Location: contig_14:780176...785688
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF11916
all species →		Vac14_Fig4_bdVacuolar protein 14 C-terminal Fig4p bindingDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR011989
all species →		Homologous_superfamilyArmadillo-like helicalInterproscan
IPR021841
all species →		DomainVacuolar protein 14, C-terminal Fig4-binding domainInterproscan
IPR026825
all species →		FamilyVacuole morphology and inheritance protein 14Interproscan
IPR016024
all species →		Homologous_superfamilyArmadillo-type foldInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR16023
all species →		TAX1 BINDING PROTEIN-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000306
all species →		Cellular Componentobsolete extrinsic component of vacuolar membraneInterproscan
GO:0006661
all species →		Biological Processphosphatidylinositol biosynthetic processInterproscan
GO:0010008
all species →		Cellular Componentendosome membraneInterproscan
GO:0070772
all species →		Cellular ComponentPAS complexInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_016767-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_016767-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
6TPM > 0
7Conditions
36.0Max TPM
1.8Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 0 0.00 0.00
holobiont · low.pH Control.temp 20 0 0.00 0.00
holobiont · control.pH_high.temp 20 0 0.00 0.00
holobiont · control.pH Control.temp 19 0 0.00 0.00
Whole organism 4 4 22.89 27.27
unannotated 1 1 35.99 35.99
live coral tissue/skeleton 1 1 27.03 27.03

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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