Gene detail

Detailed information of FUN_016770-T1 in Acropora pulchra

Genomic Location: ptg000011l:7263149...7269996
NR annotation: XP_015773900.1, PREDICTED: tetratricopeptide repeat protein 28-like [Acropora digitifera]
Species abbreviation APULC · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_016770-T1

ATGTCCTCTTCGGAAATGGATGACCAAGACGGAAGTGAAAAAGTCGATATCAAACATGGAGAAGATCTCCAGTTATTGGGTGCTTATCATAAACCCATTAAGTATAATGAAAAACGTTTGAAAATTGCAATAAAAATCGGTGATCGGGGTGGAGAAGGAACAGCCTATGGAAATCTCGGTATTGCCTACTACTCACTGGGTGACTATCGAAAAGCAATTGAGTATCTTGAAAAATATTTGAGGATTGCAATGGAAATCGGTGATCGAGGCGCAGAAGGAAGAGCCTATGGAAGTCTCGGTAATGCTTACCAGTCACTGGGTAACTATCGAAAAGCGATTGATCATCATGAAAAATGTTTGAAAATTCTGATACGAATCGGTGATCGGGGCGGAGAAGGTGCAGCCTATGGAAGTCTCGGTAATGCTTACCAGTGCCTGGGTGACTATCGTAAAGCCATTGAGTATCATAAGAAATATTTGAAAATTGCAATAGAAATCGGTGATCGGAGTGGAGAAGGAGGAGCCTGTGGAAATCTCGGTACTGTCTACAACTCACTGGGTAACTATCGAAAAGCCATTGATTATCTTAAAAAATCTTTGAAAATTGCGATAGAAATCGGTGATCGGCGCGTAGAAGAAGGAGCCTATGGAAATCTTGGTAGTGCTTACCACTGCCTGGGTGACTATCGAAAAGGCATTGAGTATCATAAAAAATGTTTGAAAATTGCAATAGAAATCGGTGATCGGGGTGGAGAAGGAACAGCCAAATCCAATCTCGGTCATGCCCACAACACACTGGGTAACTATCGAGAAGCCATTGATTACCTTGAAAAATCTTTGAAAATTGCAATAGAAATCGGTGATCGGCGCGTAGAAGGAGGAGGCTATAGAAGTCTCGGTAATGCCCACAACGCACTGGGTAACTATCGAAAAGCCATTGAGTATCTTAAAAAATCTTTGAAAATAGCAATAGAAATCGGCGATCGGCAGGTAGAAGAAGGAGCCTGTAGAGGTCTCGGTAATGCTTACCAGTTACTGGGTAACTATCAAAAAGCCATTATATATCATGAAAAATCTTTGAAAGTTGTAATACAAATAGGTGATCGGGATGGAGAAGGAAAAGCCTATTCAAGTCTCGGTAATGCCTACTGCTCACTGTGTAACTATCGAAAAGCCATTGAGTATCATGAAAAATGTTTGAAAATTGTGATAGAAATCGGTGATCGGAGTGTAGAAGGAGCAGCCTACGGAAATCTCAGTAATGTCTACAACTTACTGGGTATCTATCGAAAAGCCATTGAGTATCAAGAAAAACATTTGAAAATTGCAATAGAAATCGGTGATCCGGGTGGAGAAGGAAGAGCCTGTGGAAATCTCGGTACTGCCTACAACTCACTGGGTAACTATCAAACAGCCATTGAGTATTATGAAAAACATTTGAAAATTGCAATAGAAATCGGTGATCGGAGTGGAGAAGGAGGAGCCTGTGGAAATCTCGGTATTGCTTACAACTCACTGGGTGACTATCGAAGAGCCATTGAGTATTATGAAAAACATTTGAACATTGCAATAGAAATCGGTGATCGGAGTGGAGAAGGAAGAGCCTGTGGAAATCTCGGTGTCGCCTACAACTCCCTGGGTGACTATCGAAAAGCCATTGAGTATCATGAAAAACATTTAAATATTGCAATAGAAGTCGGAGATCGAGGAGGAGAAGGTACATCTTATCAAAACATTGGAAATGCATACTTTTCTTTTGGAGAATTCGAAAACGCGGTGGATAATTTTGTTTCCGCTGTGAATGTATTCAATTCTTTGAGATCTCTCTTGAAGTCTAAAGATAATTGGAAAATAAAATTTCGTGAGCTGCACGAGAAAGCGTACGCTGGCTTATGGTTGTCGTTGCTTAAAATTGGAAAGGTCGATGAGGCTTTGCTTGCGGCTGAGCAGGGACGAGCGCAGGCTTTGTCCGACAATTTGTTGATTCAATTTAATCTATCTGAGTCCTTACCACCTGCAACATTTGACACCGAAGGGACAATATCTCGCCTCTCGACAGAGATTATTACACCAACTATTTTTCTCGGAATTGAAGGACTCACGATCAACATCTGGTTTCTGAGCAGGGGAAACAAAGTTGTATTTCGACAAGGGAGGCTAGAAGGTGATAGAACAGAGGAAGATCCCATACACGCCTTACTGCAATCATCTTTAGTAAAAATCGGAACTGAAGATCCAGTAAGATGCGAAGGTCGCACATTTGATGAACTTGACTATGAACAGCCGTTTAGCTTAGAAGTGCAGGCCAAAGGAGTTGAAAACCTTCCATCGCCGCCCCTAGGTAACCCTTTTAGGACATTTTATGATGCAATTATTGATCCAATTGTTGACATGTTTGGACCTCAAGACGACGAGTTAGTTATTGTTCCTGATGGTCCGCTGTGCTTTACCCCATGGGCCGCAGTTATCGAATCGATTAGGATTCGCATTGTTCCATCACTTACAAGTTATCAATTGATAGTAAGTGTGCCCGAAGGACATCACATGAGAGAAGGGGCGCTTTTGGTCGGAAATCCGTACTTAAGCCAGTTGAAGAAACCAGAACCAGCATTACCATGTGCTCAAGAGGAAGTAGAAATGATTGCATCAATTCTTAACACAACAGCCCTCGTAGGGAGACAGGCAACAAAAGCTGAAGTGATGAAACGGATGTCTTCAGTCGGTTTAATTCACATTGCTGCCCACGGAAACAAGCACACTGGAGAAATTGCCTTGTCTCCAAACCGTGGATGGACTTCCGACTTCCCTCGTAAAAAAGATTACATTTTGCAAATGTCCGAAGTACAAGAGGCCAATCTTCGGGCTCGTCTTGTGGTCTTAAGTTGCTGTCACAGTGGACGAGGCAGAATCTCGAAGGGTGAGGGTGTGGTCGGTATCGCACGTGCCTTCTTGGCAGCTGGTGCTCGTTCTGTATTGGTCTCCCTGTGGGCGATAGATGACGAGGCTACCATGGTGTTCATGAAAAGTTTCTACCAACATCTGAAGGAAGGAAAAACCGCCAGTGCTGCTGTTCAGGAATCGATGAAATTCCTTCGCGAATCTAAGGATTATTCTGAGATGAAGTACTGGGCTCCGTTCCAACTTATCGGAGATGACGTCAAAATTGAATTCGAGGGGGAGGATGACGTCAAAACATCAGGATAA

Transcript

FUN_016770-T1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q96AY4	Tetratricopeptide repeat protein 28 OS=Homo sapiens OX=9606 GN=TTC28 PE=1 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000014 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13181 all species →	TPR_8	Tetratricopeptide repeat	Repeat	Interproscan
PF13424 all species →	TPR_12	Tetratricopeptide repeat	Repeat	Interproscan
PF12862 all species →	ANAPC5	Anaphase-promoting complex subunit 5	Repeat	Interproscan
PF12770 all species →	CHAT	CHAT domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR026000 all species →	Domain	Anaphase-promoting complex subunit 5 domain	Interproscan
IPR052386 all species →	Family	G-protein-signaling modulator	Interproscan
IPR024983 all species →	Domain	CHAT domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45954 all species →	LD33695P	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000132 all species →	Biological Process	establishment of mitotic spindle orientation	Interproscan
GO:0001965 all species →	Molecular Function	G-protein alpha-subunit binding	Interproscan
GO:0005092 all species →	Molecular Function	GDP-dissociation inhibitor activity	Interproscan
GO:0005938 all species →	Cellular Component	cell cortex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_016770-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.