Detailed information of FUN_016879-T1 in Acropora pulchra

Genomic Location: ptg000011l:8391840...8393573
NR annotation: YP_654388.1, cytochrome c oxidase subunit II [Pavona clavus]
Species Acropora pulchra · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
O47496Cytochrome c oxidase subunit 2 OS=Metridium senile OX=6116 GN=COII PE=3 SV=1
Q37600Cytochrome c oxidase subunit 3 OS=Pylaiella littoralis OX=2885 GN=COX3 PE=3 SV=1
P12702Cytochrome c oxidase subunit 3 OS=Paracentrotus lividus OX=7656 GN=COIII PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0014350 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF02790
all species →		COX2_TMCytochrome C oxidase subunit II, transmembrane domainFamilyInterproscan
PF00510
all species →		COX3Cytochrome c oxidase subunit IIIFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036257
all species →		Homologous_superfamilyCytochrome C oxidase subunit II, transmembrane domain superfamilyInterproscan
IPR000298
all species →		DomainCytochrome c oxidase subunit III-likeInterproscan
IPR035973
all species →		Homologous_superfamilyCytochrome c oxidase subunit III-like superfamilyInterproscan
IPR011759
all species →		DomainCytochrome C oxidase subunit II, transmembrane domainInterproscan
IPR013833
all species →		Homologous_superfamilyCytochrome c oxidase, subunit III, 4-helical bundleInterproscan

 PANTHER
No PANTHER signature was detected for FUN_016879-T1. This gene does have a gene model — the search simply returned no hit.
 Gene Ontology
GO termCategoryDescriptionSource
GO:0004129
all species →		Molecular Functioncytochrome-c oxidase activityInterproscan
GO:0016020
all species →		Cellular ComponentmembraneInterproscan
GO:0009055
all species →		Molecular Functionelectron transfer activityInterproscan
GO:0022900
all species →		Biological Processelectron transport chainInterproscan
GO:0022904
all species →		Biological Processrespiratory electron transport chainInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_016879-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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