Gene detail

Detailed information of FUN_017029-T1 in Dendrogyra cylindrus

Genomic Location: contig_28:3252529...3271046
NR annotation: XP_020602897.1, nuclear pore complex protein Nup93-like [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

FUN_017029-T1

ATGTCGTCGAGTTTTGGCGATTTGCTGCAGCAGGCAGAGCAATTGACGGCCGACATGGACAGTGGTTGGGAGCTTCCGCGCGTGGAGAGGAACCTTCATCAGCTAGCCGAGGCTGGGCAGAGATTGTGGTCACAAACTACAGGCGCTGCTGGAGATAATGCTCAGGTCAAGGCTTCCATTTTACTGGGGACCAAAGGCTTTGATGTCCCGCGACTATCAGAAAAACTTGATCGTCTTGACACAGCTAAGACCTTTGAACCTCTTGAACCTGTTAGAGAGAGAGACATTCAGGGTTTTCTTCGAAATGAGCGAGAAAATGCTATTTTAGCTGCTATAGAAGAAGCTCGAAAAAATACATTCAACCAGGCAGAGAGGCATCAGTGGTCTTGCATGGAGAATGAATGGGAAAAAGAGAAGGAAAAGATCCTCAACTCGCTGCTGGGAGCTGGGCAAGAGACATTGGACTTCTCTGCAGAGGCCGAGGTGTTCACCACCAGTTCATTAAGTTTACAAGGAAGAAGTGCACTTGATGCTACTGAGCTGGCCTATGCTAGACAGGTTTACGTTCATAATGAAACTCTGATTCAGTCAGCAAGGCACAATGTGGTTGATGGATTCCTAGAATTGACAGACAGATTTGAAGATCCGATCATCAAGGACATGTGGAGTTTCATTAAAGAACTTGGAGAAGAACTTCAAAAGTCTCATGGTTCTTCTCAGGTGGTGACAGAGAAAGTTAGGTTCTCCCTTGATTTTCAAATGGCATTTATTCAAATGGCCAGAGGTTTCCTTGAAAGAAGAtacaaaaagtttgttcagGATACTGTTTATGACAACTTACATCAAGCAAAGTTAGGTGGAGTGCCAGGCACATTTCACCTGGTCAAGAGCTTTTTAAAGATTAAACTTCCAACAGTTGTTCAAGGATTAGAGGATGGCGATGTTGATGGTACCCCATTATGGCCTTTAATTTATTATTGCCTGCGATGTGGAGACCCAAAGGCAGCTTTACAGGCAGCGCATCATGTGCCACAGCATTTGGCAGAATTTAGAGACTTCTTTGCTGAGTACATGAACAGCAAAGAGAGAAGGCTAAGTCCCAGCTCAGAAAGCAAACTACGGCTTCAGTATAGACGATCTATCCGTACAAGCCAAGATCCCTTTAAAAGGGCagtgttttgtttgattggtcACTGCGATGTGCTGACAGATTCTCATCAGGAAGTCGCCAACAAAACAGAAGATTACCTGTGGCTCAAGCTTAATCAAGTGACTGTGGATGAAGTTCAAGAAGGAGGCAATGACAGCCTTCCATTCCAACGACTACAGACCATGTTACTGGAACAATTTGGAGAGGCTCACTTCAATGCATATCAAAAACCACTGTTGTACTTCCAAGTCCTGTTTCTGACAGGCCAGTTTGAAGCTGCGATAGAGTTCTTATCCCGTTCAGAAACCTTTAGGAGTCATGCTGTGCACTTTGCAATTTCACTCTTTAAAATGCAGCTACTTCTATTACCAGATTCAATCCAAGCTCAACTTTTGACAACTTTTTCTGGAGATCCCCCACCCAGTAGAAGATTAAACTTTGCCCGACTCATCATGTCATACACTCGGAAATTTGAAGTTACAGATCCTCGAGAGGctcttcaatatttctttttgctGAGGGGAATGAATGGGCCACAGGGTGAAGATCTCTTTATGTCCTGTATAAGTGAACTTGTTTTGGAAACTAGAGAGtTTGAAATGTTGCTTGGACGCCTAGAACCAGACGGGAAGAGGAAGCCTGGTTGTATCGACAAGTTCCACAAAGATACGCAAAAAATCATTGAGCTTGTGGCAAAGGATTCTGCTGAAAAGGGTCTTTCTGAAGAAGCAGTCAAACTGTTTGATCTAGCCAAGAATCATGAAAAAGCATTGGTAATCCTGAACAAGCTTTTGAGTCAGGTGGTGTCAACATCTAGTAGTCTGCAGTCTCCACGGGACAGAATTCAGACCATGGCAATAGAGTTAGCTCAGAGATACAGAACTCTGGGTCACACAGCAAGCCAGAGTAGAATTAGTACATTTTTCCTGCTGTTGGATCTGATGCAGTTCTTTGACCTGTATCATGCTGGCCAGTTAGACACTGCCTTGGATGTGATGCATAAGCTGAGACTAGTTCCACTGGGAAGTGAATCAGTGGAGGAAAGAGTGGCAGCCTTTAGACAATACAATGATGAGATTCGACGAAACTTACCAGATGTACTCCTGGCAACAATGAACATACTTTACACAAAGTATCGCAGCACAAGAGGGAGTACTCAGAGCCCTTTAATTGAAAGTCAAAGAGATGACGGAGGACAGGAAAGGTATCGGGACGTTTTGAGGCGCCAAGCACGAGCCTTGATAACGTTCGCGGGACTGATCCCGTACCGTCTTCCTGGTGACACGAATGCACGCCTCGTTCAGATGGAAGTCCTCATGAACTGA

Transcript

FUN_017029-T1

Protein

Uniprot

Uniprot term	Description
Q7ZU29	Nuclear pore complex protein Nup93 OS=Danio rerio OX=7955 GN=dye PE=2 SV=1
A5PJZ5	Nuclear pore complex protein Nup93 OS=Bos taurus OX=9913 GN=NUP93 PE=2 SV=1
Q66HC5	Nuclear pore complex protein Nup93 OS=Rattus norvegicus OX=10116 GN=Nup93 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04097	Nic96	Nup93/Nic96	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007231	Family	Nucleoporin interacting component Nup93/Nic96	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11225	NUCLEAR PORE COMPLEX PROTEIN NUP93 NUCLEOPORIN NUP93 DEAD EYE PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005643	Cellular Component	nuclear pore	Interproscan
GO:0006606	Biological Process	protein import into nucleus	Interproscan
GO:0016973	Biological Process	poly(A)+ mRNA export from nucleus	Interproscan
GO:0017056	Molecular Function	structural constituent of nuclear pore	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14309	NUP93, NIC96; nuclear pore complex protein Nup93	-	Messenger RNA biogenesis	ko03019	deepkoala