Gene detail

Detailed information of FUN_017186-T1 in Colpophyllia natans

Genomic Location: contig_28:2384015...2390033
NR annotation: XP_020618480.1, matrix metalloproteinase-24-like [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

FUN_017186-T1

CTGCTCACTATTAATTCCTTTAGAGTGGTTAACACACCTTTTCCTGACCTCGTTGAAATTGTTTTGTGGAGACACAGTCTTATCGACGAACACAATATTTAGTTTGCGGTGGCGTTGAATATAGCTAACTGGCATTGATCCACGCATAGGGAGGTTTTCGCATATATAAGGACAGAACTTGCTTGTGTGACACCAGTTCAGACGAAAGTCAATTCTACATCTGTCTACAGCGGCAGAACATTCAGCATTCAGCAATACTTTCGGTGTTGAAGGCAGAGAATTTTGAAATAGTTGCAGATCTTAGTACTGTGAGTGGAAAATGGCGTACACAGAAAATGTTGGTGGGCTGAAGACAGCATTTCGGTTAATCCTCGTTGCTTGCTTCTTCTTTTGCATGCCAAACTTCGTAGACAGTAGTCCACTCAATTCGAAGAAAGTAGCGGAAGGAATTGATTATTTAACAAGATTTGGCTATTTGGTTGCCGATGATCCTAGAACGGGGAATCTAAGAAGCCAACAAGATTTAGAGAAATCCATCAAAATGCTACAGCGTTATGGTGGTTTACCGGAAACGGGCAAATTAGACGCGGCTACCATCAAGCTAATGGGAGAATCCCGTTGTGGCGTGTCTGACTTCGGTAAGACGGACAACACTCGCAGAAAGAAGAGATACACATTGCAAGGGTCACGATGGAAGAAACACGATTTGACGTACAAAATCAAATCTTTCACATCAGACATCAGGGATACTGAGAAACAACGGCAGACCTTCAGAAAGGCGTTCAAGTTATGGAGTGATGCAACCAACCTGCGAATTAACGAAGACAGATACGCTGATGATAAAAACGTTGATATTCACATCAGTTTTGAGACCGGATACCACAGTGATGCCTACCCGTTTGACGGAGCAGGCGGAACTTTAGCGCATGCGTTCTATCCTCATAACAACTTAGGCTTATCGGGCGACGCGCATTTTGACGATGGCGAGCGATTCACCATAGGAACAAAGGACGGCATCAACTTGGACTGGGTGGCGGTTCACGAGTTTGGACACAGTCTGGGCCTGGAACATTCCAACGTGCGGGAATCCATCATGTACCCTTGGTATAAAGGTTACAAGGAGAACATCAAGCTAACCTATGACGACATACAAGGAATTCAAGCGCTCTATGGGACACCAGCACGGCCTACAAATCCTGCACCGGCTACGCCGAAACCGACAACCACCAAACGTCCAATCCCTGAGGAAAATGATGTCTGTTCTATGAGTTCGTACGACACTTTTTTCCTTGGTCCTGACAAGAAGACGTACGCGCTAAAGGGTACGCAGTACTGGATCATCTCATCTGGAAGCGGTGCAGGCTTGGAGAGTGGGCCTCATAGGGTAACTGATTTGTGGAAGGAACTCCCGAACAAGATTGACGCTGCTTATAGGAAAAGCGCTTCCAGGCTGGTGTTCTTCAGCGGAGCTAAGGTCTGGCAATATTATTACAAAAGTGAGCTAGATACCTATTACATCGAGTACAACGGACCCCGCGATTTCAGACAATATGGATTGCCAATGGACTTAAAAGACATGGACGCTGCCTTTGTTTGGGGAAGAAACAGCAGAACGTACTTCTTCAAAGGTGACAAGTATTGGCGCTACAATGGACGCAAGATTGATTACGGCTATCCTAAAAGCACCAGTGTTTGGAAAGGACTACCTGCGAATATTAACAGTGCTATGAAGTGGAGAAATGGAAGAACTTACTTCTTCGTTGGAAGTATATACTACAAATTTAATGACTGGGAGATTCAAGTAGAGGCTGATTATCCCAAGAGTACAGCGCTGAAGTGGATGCATTGTGAGAAGGATAATCTGGGCAAGATCACAACCCCTGCGACACCAGGCGTGACGCAAAACAAGACTCGGGCGTATCATGGGTGCGATCATGTTCACGAAAAATCGTCTGGAACAGCGGTCTTCCCCAGTCTAGTCACGCTCAGTTCTTTACTGTTGGccattttaaaactaaacttttgAAAAGTAGAAAAGTAGTATTTATTTATCACTATACGCTAAAACCGTGGCACGAACAACGTGAAACAAAGATATTATAAACGGTTTCTTCTTTTAGCAAAGGACAGTTCCTCTTCAACAGTTACGTGGGCCATCACGCAATCTTCATTTAGTTGGGGTGGATTGCATGACAGAACCATGTAACGGCTGCTTCAACGGCTTAGCAAATATATTAAAGAGAGGGAAGAAAATTTAagagtttcatttgaaattaagtaGAGCTAGCTAGAAACATTGACACTATGGAACAATGTTCATTGGcttccaaaaagaaaacattaatatattttttttttttcatcaatttgttaatatttgaaatCTACAAACCAGATGTAAATAGTTGAATCATTTTAGAAATACCCAATATGTGTTACTTATTGAAATAGActatgaaaaaaattgaattaataTATATTATTCAACAGCCAGCTGTCCAAGTGAAAGGGAAATAATTTCATAACTTGGATCTTTATGCTGACATGCTTTTCAACTTTCATCTGCACCAAACATTTAGCTTCCCTGTTCGATTATTCATGACGAATCTGTTGCAAACTCATGAAAATATGAGGCCCAAAATTGGCCATGTTGTGTGACATCTGAAAAAGGTCCATTGCTCTCTTGTTGTTGATGTTCAATTTCTTATGAGAACTGTATTTTACAATCACATGTAAGATATATTACGACCTGCTATTATttattgtttgcttttcagGTAAATATGAATTAAACATTTTACACAATATTGAGTGTTTGGTCTCTTTTTCTTAAGTCCATAAGTGTTAGTGCCAACCTTGTACTTGAAACACACTGTGGGTGACACAGTAGTCTATTTCTGGGTGCGCTTGGCTAACCACACATTTACCAGAACTTCAATTTGCCAAAAATGTATTACATGCATCTTAGCTTTCCATCTCTCCCATTCTCC

Protein

Uniprot

Uniprot term	Description
Q3U435	Matrix metalloproteinase-25 OS=Mus musculus OX=10090 GN=Mmp25 PE=2 SV=1
Q10739	Matrix metalloproteinase-14 OS=Rattus norvegicus OX=10116 GN=Mmp14 PE=2 SV=2
Q5RES1	Matrix metalloproteinase-14 OS=Pongo abelii OX=9601 GN=MMP14 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01471	PG_binding_1	Putative peptidoglycan binding domain	Domain	Interproscan
PF00413	Peptidase_M10	Matrixin	Domain	Interproscan
PF00045	Hemopexin	Hemopexin	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002477	Domain	Peptidoglycan binding-like	Interproscan
IPR036375	Homologous_superfamily	Hemopexin-like domain superfamily	Interproscan
IPR001818	Domain	Peptidase M10, metallopeptidase	Interproscan
IPR021190	Family	Peptidase M10A	Interproscan
IPR006026	Domain	Peptidase, metallopeptidase	Interproscan
IPR024079	Homologous_superfamily	Metallopeptidase, catalytic domain superfamily	Interproscan
IPR036365	Homologous_superfamily	PGBD-like superfamily	Interproscan
IPR018487	Repeat	Hemopexin-like repeats	Interproscan
IPR000585	Domain	Hemopexin-like domain	Interproscan
IPR033739	Domain	Peptidase M10A, catalytic domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10201	MATRIX METALLOPROTEINASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004222	Molecular Function	metalloendopeptidase activity	Interproscan
GO:0006508	Biological Process	proteolysis	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0031012	Cellular Component	extracellular matrix	Interproscan
GO:0008237	Molecular Function	metallopeptidase activity	Interproscan
GO:0030198	Biological Process	extracellular matrix organization	Interproscan
GO:0030574	Biological Process	collagen catabolic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K07763	MMP14; matrix metalloproteinase-14 (membrane-inserted)	EC:3.4.24.80	Peptidases and inhibitors	ko01002	deepkoala