Detailed information of FUN_017222-T1 in Siderastrea siderea

Genomic Location: contig_14:7291497...7292144
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
No Pfam domain signature was detected for FUN_017222-T1. This gene does have a gene model — the search simply returned no hit.
 InterPro
InterPro termTypeDescriptionSource
IPR011004
all species →		Homologous_superfamilyTrimeric LpxA-like superfamilyInterproscan
IPR027777
all species →		FamilyDynactin subunit 6Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13072
all species →		DYNACTIN 6Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005869
all species →		Cellular Componentdynactin complexInterproscan
GO:0007052
all species →		Biological Processmitotic spindle organizationInterproscan
GO:0070840
all species →		Molecular Functiondynein complex bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K10428DCTN6; dynactin 6-Cytoskeleton proteinsko04812deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_017222-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
22TPM > 0
7Conditions
271.1Max TPM
6.4Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 2 2.11 34.97
holobiont · low.pH Control.temp 20 5 3.79 22.39
holobiont · control.pH_high.temp 20 5 14.16 271.14
holobiont · control.pH Control.temp 19 4 1.47 11.20
Whole organism 4 4 17.80 28.53
unannotated 1 1 12.88 12.88
live coral tissue/skeleton 1 1 27.47 27.47

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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