Gene detail

Detailed information of FUN_017237-T1 in Siderastrea siderea

Genomic Location: contig_14:7690810...7717062
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_017237-T1

TACACATTCACACGAGGACAAAGCAAGATGGCGGAAGGAATgaagaaaaaagtacaacaCATTGTGGCGGATTCAGCTGCTTTCCTTAAAAATGCACCTATCCACGATATGTGCGAGAATGTATACACAGTTGAAGAAGTTGTTAATGAGATCAAAGATGAGGCAACTCGCCAGCGGTTGGCGGTATTGCCCTATACTCTTCACTTCAGACAACCTTCTACTGAGGCACTACACGCAGTGACAGAATTTGCTAAACTAACTGGAGATTTCAGAAGTCTTTCTGTTGTGGACTTGAGAGTTCTAGCTCTTACCTACCAGCTGGAAAAGGAATACTGTGGAACGGATCACATAAAGACAAAACCCTGTAAACAGGTTGAGGTCTCTCAGGGGTTTACAGGGAAGACAGTTCCTGGATTCTTTGTTGACAAGAAATCACAAGAAGAATGTGGAGAAAATGGGCCAAGAGGAGAAATAGAAAATTCCATTACAGAGACAACACAGCATAATCAGTTAACACTAATAGAAAAACCAGAAGTAATTAATGGGTTGAGAGAGGAAGCTGAGCTTAACAGTGATGAGAGCAATCAATTAATGGCAAGGACAAAAATGACAAGAGAAGTAACAAACGTGTGTAATTCTTCATGTCATGGCTCCAGTGAAAATGATGGAATTGATGAAGTAGGTGGTAACGACCCTGATGATGATGAgaatgaggatgatgatgatggctgGATTACACCTGATAACATAAGCCACGTCAAGGATGAAATGAGGAAAGGTACCCTTGATGCAGTCCCTGCTAATGTGACTGTGGGATGTCTTACAACTGACTTTGCAATGCAGaaTGTACTGATTCAGATGGGATTCCATGTGATTTCCCTGGATGGTATGTTGATCAGAGAAGCACGCAGCTACGTTTTGAAGTGCCATGCCTGTTTCAGATTAACAAGTCAACTGGGGAAGCGGTTTTGTCCGTGGTGTGGTAATAACACGCTGCTTAAGGTTACAGTGAGTGTTGATGAGAATGGTGTCACGCATTACCAAGTACCAAACACAAAGAAACCATTTAACATCAGGGGCAGGAAGttCCCTCTCCCTCTACCTAAAGGTGGTCGCCACAGTGACGGCCCTGTCCTTACTGAAGACCAGCCACGCGGTCAACACCGTCTGCCTCGCAGTAAAGATCATGTGGATGTGTTTGATGCAGATTACATCGCACGAGCTTCGCCATTCGCTGCTAAAGACGTGACTAGCCGCGCCTCCCAGTTGGGTTATCACTTAAAAGGTGCATACAACAGCAAAAATCCAAATGAAGTCAAGAAAAAGAATGtgcggagaaaaaaaaaagatctgtAATATAACACGGGATGCTGAAAAGGACtgcttcattaaaaaaaaagtaaagttTAAAGCTCTGGATTTTCTTGTTGCTAATAACTGCAAAAAACGGCGAATTGCATTCGTGTAACAGCTACTGCCTTAACTTTGGGTAGAATGCAAGGAGGAATGAAAGGTTCATCCATGATGCTTTTTGTGTGAAATTCAATCTGTTCGTTTTTGACACTTCCCGAGACCGTTGCTCTTGGCGCGTAAAATAATATGTTTTTGCTTGGATTTTTCTCATTCTTTAAGGACGATGTCGgcaaatcttttgttttgcatttgtttttggTTATTTATTCACAGGTATCCCAAGCGTactataagagtttgtatggaaaatcgaaGTGAGAAATTCCGTCGATAAATAGATAAGCTTTAAAAGGTAAAGCTGCGAAAGGAGGTTGGcaagtttttttggccttggagtgtattgTAACGAAACAGCTAATTTAGAACTATTGTGCGCGAGCTGCAAGGAACCGTTATTTTAGAAGTGTTGTGCACGAGCTCTAAGGAACCGTTAAGATTACAAATAGTTAACGTAGATATGTAGGACGATTATATCGCGAATAGCCAACGTAGTATACACGCAAGACTAGGTATAAAAGGGGCTTACACGTTGTAACGGGGGTTTTTGGTGCGCTGATCTTGCACTATAGAGGAGCCGCTGAGTGTGGTAATAAACGGTTATTCGAGAGCTGAATTTGTTGTGGTCGTCGACCGACGCAGCGATCGTTacagtatcttttgaagtcaaaatttcgcatagaagataaacttcgatttcctcgatactacaccaccttttcaacatatgaccaaagtttattctCTCATTGGTTTCCTAACAACAACTGTCGCCATAGCAGCGGTAGTGGACAACCCcttattttaaataatgtcgaatatctcgaaaactagtcagacactttaggACGAAACTTGACCTATTTGAACTACTCGACCTACACAagttgtatgcgaaattagggaaaaatctgtgagag

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17146 all species →	PIN_6	PIN domain of ribonuclease	Domain	Interproscan
PF08772 all species →	NOB1_Zn_bind	Nin one binding (NOB1) Zn-ribbon like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR033411 all species →	Domain	Ribonuclease, PIN domain	Interproscan
IPR036283 all species →	Homologous_superfamily	NOB1 zinc finger-like superfamily	Interproscan
IPR039907 all species →	Family	RNA-binding protein NOB1	Interproscan
IPR017117 all species →	Family	Ribonuclease Nob1, eukaryote	Interproscan
IPR014881 all species →	Domain	Nin one binding (NOB1) Zn-ribbon-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12814 all species →	RNA-BINDING PROTEIN NOB1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004521 all species →	Molecular Function	RNA endonuclease activity	Interproscan
GO:0030490 all species →	Biological Process	maturation of SSU-rRNA	Interproscan
GO:0030688 all species →	Cellular Component	preribosome, small subunit precursor	Interproscan
GO:0042274 all species →	Biological Process	ribosomal small subunit biogenesis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11883	NOB1; RNA-binding protein NOB1	-	Proteasome	ko03051	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.