Detailed information of FUN_017532-T1 in Siderastrea siderea

Genomic Location: contig_14:11619025...11620094
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF07156
all species →		Prenylcys_lyasePrenylcysteine lyaseFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036188
all species →		Homologous_superfamilyFAD/NAD(P)-binding domain superfamilyInterproscan
IPR010795
all species →		DomainPrenylcysteine lyaseInterproscan
IPR017046
all species →		FamilyPrenylcysteine oxidaseInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR15944
all species →		FARNESYLCYSTEINE LYASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0016670
all species →		Molecular Functionoxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptorInterproscan
GO:0030328
all species →		Biological Processprenylcysteine catabolic processInterproscan
GO:0001735
all species →		Molecular Functionprenylcysteine oxidase activityInterproscan
GO:0030327
all species →		Biological Processprenylated protein catabolic processInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_017532-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_017532-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
6TPM > 0
7Conditions
9.4Max TPM
0.4Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 0 0.00 0.00
holobiont · low.pH Control.temp 20 0 0.00 0.00
holobiont · control.pH_high.temp 20 0 0.00 0.00
holobiont · control.pH Control.temp 19 0 0.00 0.00
Whole organism 4 4 5.95 9.42
unannotated 1 1 1.59 1.59
live coral tissue/skeleton 1 1 4.46 4.46

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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