Gene detail

Detailed information of FUN_017889-T1 in Dendrogyra cylindrus

Genomic Location: contig_31:1697696...1713524
NR annotation: XP_022781293.1, protein Red-like [Stylophora pistillata]
Species abbreviation DCYLI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_017889-T1

GCAACACCAACAAAGTCGAAGCGATGCCAACGGAAGGTGTTGAAGTGTTCTCAAATCCATTAGCGCCGCCGTCCTCGTCAGGATCATTTGGCGGCCATCATGGCCACGGCGGCGGGGTACCAGCATTGACAAATGAAGATTTTCGTAAGCTGTTGATGACCCCTCGGTCTGGCGTGCCATCTGTTGCTCCACCGTCAGCAAAGTCATCAAGTCACAGCAGTAAGAGCGTGCCAAGCAGTATCCATTCTCATCGCAGCAGCAGggatgatgaagatgattatcATGAAGGTGGTGATGATGACCCCTTGTCAAgaaggagaaagaaaaagaaATATTATGCAAAGCTCAAGAAGATGGAGGAGGAAAGAGAACAAGAGCTAGCAAGTAAATACAGAGATAGAGCAAGAGAGCGAAGGGATGGTCTAAATCCCGACTATCAGTCAACAGACACCCTAAGCGCAACAGCAAACTACAGAGCAGTTGGACCTACAGCAGAAGCCACGAACACTGCTGCTGAGAGACGTCGCCAAGCTATCCAGGAGAGTAAGTTTCTTGGTGGTGACATGGAGCACACTCATCTTGTGAAAGGCCTGGACTTTGCCTTGCTACAGAAGGTTCGTAGTGAAATTGCAGAAGAGGATGAAGAAGACGAGGAGCTGAAtgttaagaaaatgaaaagtaaacaaAAGGACAAGGAAGAACAGGATAATGAAGATGAGGTTGAGTTCACAACAAAACTAGGTCAAAAGATATACAAAACTTTGTTCAGGAATCGTCCGGCAGAGAGAAATGAACTATTTCAACCAGGACGAATGGCTTATGTGTTTGATGTAGAAGATGAATATGCTGAAAGCGATATCCCCACAACCCTCATCAGGAGTAAGGCAGATTGTCCTGGAATCGAAACTCAAGCAACACTGACCACCAATGACATTGTGATCAACAAATTGACTCAAATTTTGTTGTACTTGCGACAAGGCACCAGGGGAGGAAAGAAGGTCAAAAAGAAGGATAAAGtgaaagagaaagaaaaaaatgacaagCAAGGACAAAAGATACGCCCTGCAGGAGCTGACGACAGTATTTTTGGAGAAATTGGGGAGTATGATCCCACCTCAAGTATGAAAGaatatgaaaagaaagaaaaggccAAAGATAGAGACAGAAAGAAATCCAAGAATTCATCAAGTTACTTTGAGAAATCTGAAGGCAAAGAAGATGAGGCACAGTTTAGTAAGAAAGaCGTTTCAGCTGAAGAGTTTGCTAAGTCTGTCACACAAACCTTTGGCGGCAAAAAGCAGGAAATGGAAGAGAGAGCCGCATGGGATTCAGTTGACCCAAAACGAAGGAAAAGGGATCGTCACTCTCGCAAAGTGAAAGATGTCAATTATGTTCCAGACAGCTATTCAGAGTGTTATCCAGGTGCTGTAGATATGCCATACGACAGCGACGAAGAGGCCGATTACAGTAAAATGGATTTGGGTAACAAGAAAGGTCCAATTAAACGGTGGGATTTTGAAACAGAAGAGGATTATCACAGTTACATGGAAAGCAGAGAAGCTCTTCCAAAAGCTGCTTTTCAGTTTGGTATAAAGATGTCCGAAGGACGCAAAACACGACGTGCAGGTCCCAAAGACGAGAAGGCTAAACTAGACCGGGACTGGCAGAAAATTAGCCAGAtgttgaccaaaagaaaaggaGATGAAGGGAAAGGAGACGTTGACAGCaagagaagaaaacactaaGAAGAACCAATAGCATCCCTTGTATTTTTATTGTACCCTTAACAAAACTTACATGCATACTATTACTATCTGGCCACACTATCATTTGTTTAAGTTAAGGTCAATATGATATAAATTTTAATTTCACTTTCTTAAAATCACATCTTGCTGTAACAGTCAACCATTTTGTGctaatttaaataattatttgaagTGTGAAGGTTAATAAGTGAAGCTTGCGAGGAAATGCCTTGACTTTTTGCTTGTAGACAATTCAAGCTTAAAATAGAGAACACACTCTACGAAAATAATACTAGCAGTATTTCTAAGGTATAAGCTGTTTTTGGTGATAATACCATGTTCCAGGTTCCCAGTTTTTGAGtgaacagaagaaaaaaaagacgtCAAAGAAAGATGAAAGATGTCAGTTGTAAATCCTGCCCTCCCCTTTCCCCTCCCCAGTGcctccccctccctctccccctCTTGCTATGCTGATGTTGTTTTCCAATATTCCTGTACCTGGAGCAAGCTTTTTAGAAGTTATCAAACTCAagaataatattaaaaattgaaaaGATATCTTGTGTCACCCAATCATGACATTGTATTTGTGGCTTTTATTTAATTAAAAGTACAACTGACAACatttattttgctttgttttcaatttttgtcaCTCAACttaacatatttttaaaaaatataacgTTTTGTGACTCCataaaaataaggaaaaatgTACTAACACTGTTAATGTAACAGAAATGTGAGTcaaagtttgggagaacaagAAATATCTTGAGCTCTCAATGACTGTTTTCAAAACAGTTTTCAAAATGTCTATACCTCAAGAAGGCAATTTATTTGAAATACCACTTATAAAATACTGAGATTCTCGGTGATATCTTTCTCATAGAATAAGCTATTATTTATCAGTGTATAAAAAAATAGATATGACATTTAGCAGTCCACCTCAAATGatctttgtgtgtgtgtgtacaaacaaataaaaatttcttGATCTCCCCCCTCTACATTTTTGTCCTGGAGAAAATttcataaaagaaataaaaccttTAATACTTTGGTAAAGAAATGAACGGCTGATAAAACTTTCCCCTGTGCATCAGGCACTACACACTTCATCTCAGAAGCAAAATGACTTGGCATCAGATTATATAAAGACATGGTAACAGATAACTATCTTCAACACTTTTTGTGGTCACTAAGGTCCATTTTAGTTCATTTTCATTATTAGCCTAACCCCATTTATCAATTTCTTTTAATAAATATTTGCTTTGATGATGATCAGTACagatataaaaacaaaaatatgtcaAAATCAGGCTTCCAAAGGACATATCAAAAATAGGTTTTTGTTAAGAAaaacataattattataaaagcTAATTATTATTAAGGTGATGAAACAGACCACCTTGGTTCTGATGGTCGGCCATCAATACTTGTAAAGTTGATCACAATCTCACTTGCCTTTGGCTTGAACTGCCtg

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9Z1M8	Protein Red OS=Mus musculus OX=10090 GN=Ik PE=1 SV=2
Q66HG8	Protein Red OS=Rattus norvegicus OX=10116 GN=Ik PE=1 SV=1
Q5NVI3	Protein Red OS=Pongo abelii OX=9601 GN=IK PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005282 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07808 all species →	RED_N	RED-like protein N-terminal region	Family	Interproscan
PF07807 all species →	RED_C	RED-like protein C-terminal region	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012916 all species →	Domain	RED-like, N-terminal	Interproscan
IPR039896 all species →	Family	Protein Red-like	Interproscan
IPR012492 all species →	Domain	Protein RED, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12765 all species →	RED PROTEIN IK FACTOR CYTOKINE IK	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000398 all species →	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13109	IK, RED, RER; IK cytokine	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.