Gene detail

Detailed information of FUN_017939-T1 in Acropora pulchra

Genomic Location: ptg000012l:2135826...2146972
NR annotation: XP_029196310.2, protein PALS1-like [Acropora millepora]
Species Acropora pulchra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_017939-T1

ATGTCCACTCTCTCCAGCTGTCGATTTGAGGAGCTGTCTTTTTACAGACTTTTGACATGTCTGGAAGAGATTCGACACAAGCTCGAAGAACGAGAGGATGATTTTATCTTGTGTTCCAGTTACTTTCAAAGTAGAGACTTTCGGAAATTTTTCCAGTTTCCTACCACTGCGTCTTCTTCAGCTGATCGGATTTTGTGCAGCGATGAAGAATTGACGGCACCTTACCTTCAAAACAGCAAGAGATCACTTGAAATTGCACAAGAGATTGTAGACACACTTCTTCCTTGCTCTCTTGAGAAAACAGAGGGGCAAGAACTGCAGCATATTCTGACGAAACCTCATGTAAAGGGCTTACTGCAGGCTCACGACGCAGTGGCAGCCGGAGATGTCCCTTCAATTTCTGTTAGAGATGAAGTGACAGATATTTTGGGGGCGAATGTCGATATGACCAGGACGGAGAAGCTTCCGAGCAAAACGCTGCATAGCAAAAGTCAAGAAAATAAAGGCGACGATACTGTTGATGTTGCTGGAAATTCGGATGATAATAATGATGATGATAGTGCTGATGATGAAGACAACGATGATATTGACAGCGGAGGTGAGAGTGATCTAGGAGAAGAGGCAGACAAAGCTAAAGACGGGGAAGTTCACGAGAGTTCAAGCGAGACTGAAGTTGACAGTGACGAATCCCATTACAAATCGTCTCACTACATACCCTCTTTCTCTGATAATAAACACGTCATCGAAGTACAAATACAAGTCAATAAAAATGATGGGCTCTTTGGTGCGGCTGATAATGCTCACCACAATGATGGCTCATTTCCAGGCGACAACGATTCAACGAAGCATGCAAACGTCACCCATAATTTTATTGATAGCAAAGAGCAAGAGGCGTGGAACAAGAAAAAAAAAGTAGATTCATTTCCAACTAAGACCATTTCAGAAGAAACCAGAACCAGCATTGAGGACGAGTGCGTCATTTTGAAAGATATTCGTAAAGAAACTGACCTTGATCAAGAACGTAAGGGACGCAAAAAGGAAAAAATATCGTTTAGCTCAAAGGCCATAAGTGAACAGAATATTGAAGCGCAGGTGACGACGGGCTCTGAAAATGCTACCAAGACTGTTACACTGTTCAGAAATGCTAAAGAAACACTGGGAATAACAGTCAAGGCGGTAAAGAACAGCGATGACAACGTGCGAATTTTGGTGGCAAGAATTCTGAGAGGAGGTCTTGCGGACAACTTTGGATCTTTGCATGTTGGAGATGAAATTCTTGAAATAAGTGGAAAACAAATTCGGGGAATGACCGCGAACGAAGTGGCCGAGATCATGGATGGCATCACGGGAAATGTAGACATCAAGATCAATCCAATCGAGAAAGACAGGAACTGGCTGGCCAAAGAAACCAAGGTTAGCGTAAGAGCATTCTTCGACTACAATCCCCTACAAGATCCGCTGATTCCCTGCAAAGAAGTGGGTGTGGAATTTAGCACCGGTGACATTCTGCACGTGGTTAACGTAGATGATGGTAAATGGTGGCAGGCCAGAAAGGATGGATGCAGTCATGATAAAGCTGGTCTTATTCCAAGCAAAGATTTCCAAGAAAAGCGCCAACAGTTCAACAAAATTTCTACAGCAACCAATTTTTATTTACAAAAAGACAAAAACGGAAAACGTACATTTCCATTTTTGAAGAGAAGATCAAGTGATTCAAACAAAGTGCTGTGTAATTTCCAACAAGATGTCAAAGTGGACAGCTGGCCTGCTTACGAACCTGTCGCAAAATATCTGGTTAAACCACCGAAAAAGAGGCTGCTTTTACTCATAGGAGCTCCTGGAGTGGGGCGAAACGAAGTTAAGAAGCAACTGCTCACAAACAGTCCCCAAAGCTTCATAACAACAGTGCCTCATACCTCAAGACACATGAGAAGTCATGAGACAAATGGGAAGGAATACTTCTTCGTATCACGAGAAACCATGGAGAATTTCATTCACAACAAAAAACTGATCGAGTTTGGTGAATACAAAGGCTGCTTGTATGGCACTTCCAAAGATTCCATCACGCGTGTTCTGAAAACAGGGAAAACATGTGTTCTGAAAGTTCAACCTGAGGTGATGCTGTTGTTAAGGACAGCTGAGTTTAAGCCGTACTGTATCTACATTAAACCACCTTCTTTGAAGGAGCTACGTGCCTCCAGACTGACAGTACAAGGCAAATCCAAGCCTTCCTCTTCTAAGTCAAACATAAGAACGTTTAAGGAAGAGGACTTACAGGAGATGATAAATGCATCGAGAGAACTTGAGGAACACTATGGAAAATTGTTTGACCTTACAGTTGTTAACAAGAGCATCGACGAAGCCTACGACAGAATTACAGAAGCCATGGAAAGACTCGAGCAAGAGGAGCATTGGGTTCCAGAGGACTGGGTACGAATGGACTAA

Transcript

FUN_017939-T1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6P0D7	MAGUK p55 subfamily member 7 OS=Danio rerio OX=7955 GN=mpp7 PE=1 SV=1
A8KBF6	MAGUK p55 subfamily member 7 OS=Xenopus tropicalis OX=8364 GN=mpp7 PE=2 SV=1
Q5U2Y3	MAGUK p55 subfamily member 7 OS=Rattus norvegicus OX=10116 GN=Mpp7 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000787 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00595 all species →	PDZ	PDZ domain	Domain	Interproscan
PF00625 all species →	Guanylate_kin	Guanylate kinase	Domain	Interproscan
PF02828 all species →	L27	L27 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR004172 all species →	Domain	L27 domain	Interproscan
IPR001478 all species →	Domain	PDZ domain	Interproscan
IPR036034 all species →	Homologous_superfamily	PDZ superfamily	Interproscan
IPR008144 all species →	Domain	Guanylate kinase-like domain	Interproscan
IPR050716 all species →	Family	Membrane-associated guanylate kinase	Interproscan
IPR020590 all species →	Conserved_site	Guanylate kinase, conserved site	Interproscan
IPR008145 all species →	Domain	Guanylate kinase/L-type calcium channel beta subunit	Interproscan
IPR014775 all species →	Domain	L27 domain, C-terminal	Interproscan
IPR001452 all species →	Domain	SH3 domain	Interproscan
IPR036028 all species →	Homologous_superfamily	SH3-like domain superfamily	Interproscan
IPR036892 all species →	Homologous_superfamily	L27 domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23122 all species →	MEMBRANE-ASSOCIATED GUANYLATE KINASE MAGUK	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0005911 all species →	Cellular Component	cell-cell junction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_017939-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.