Detailed information of FUN_017964-T1 in Siderastrea siderea

Genomic Location: contig_15:5293693...5336703
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Gene family
Family typeMembership / link
Ubiquitin familyE3|E3 adaptor Cullin RING|F-box · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF12937
all species →		F-box-likeF-box-likeDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001810
all species →		DomainF-box domainInterproscan
IPR036047
all species →		Homologous_superfamilyF-box-like domain superfamilyInterproscan
IPR006553
all species →		RepeatLeucine-rich repeat, cysteine-containing subtypeInterproscan
IPR032675
all species →		Homologous_superfamilyLeucine-rich repeat domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR38926
all species →		F-BOX DOMAIN CONTAINING PROTEIN, EXPRESSEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K03875SKP2, FBXL1; F-box and leucine-rich repeat protein 1 (S-phase kinase-associated protein 2)-Ubiquitin systemko04121deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_017964-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
85TPM > 0
7Conditions
1,067.2Max TPM
356.3Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 20 298.15 689.24
holobiont · low.pH Control.temp 20 20 519.64 1,067.21
holobiont · control.pH_high.temp 20 20 368.05 998.19
holobiont · control.pH Control.temp 19 19 342.45 807.76
Whole organism 4 4 11.85 17.49
unannotated 1 1 2.50 2.50
live coral tissue/skeleton 1 1 10.57 10.57

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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