Gene detail

Detailed information of FUN_018138-T1 in Acropora pulchra

Genomic Location: ptg000012l:4762332...4781550
NR annotation: XP_044165128.1, LOW QUALITY PROTEIN: AP-4 complex subunit beta-1-like [Acropora millepora]
Species abbreviation APULC · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_018138-T1

ATGTCTACTTCGTCAGGGGGTTTTTTTAGCGAGTCGAATAAAAAAGGTGAAGTGAGTGAATTACAGAAGAACTTGCAATCACCTGAAGTGCAACGAGATGCGAGACAATACAGGAAAGTTGTCCGAAAGGTTATCGCTTACATGACTCTAGGGATGGATGTGTCTCCACTTTTCATGGATATGATCAAGGCTGCAGCTACACATGACCTTGTTCAAAAGAAACTTGTTTATCTCTACATCAGCAGCTATGCTTCTTCTAATCCTGAGTTGGCCTTGTTGACTGTTAATACACTAAGAAAAGATTGCCAGGACAGCAGTGCTATGGTCAGAGGTCTTGCACTTAAAAGCATGTGCTCATTGAGACTCCCTGATCTTGTTGAGTACATAGTTGAACCCCTTCTTGCTGGACTTCAAGACCTCAGCTCTTATGTGCGGCGTTCTGCTGTCATGGGCTGTGTGAAATTGTATCATCTTATTCCTGATTTTGTAGAAGATAATGGCATCATAGAAAAGCTTGTTAGGTTGTTGAGTGACCCTGATCCACAGGTTACTTGTAACTCACTTGTAGCATTGGATGAAATTTTGGCTGCTGAAGGTGGAGTAGTGATGAGAAAGAAAGTTGCTCATAGCTTGCTGAAGAGATTGAGGAGCTTCAGTGGCTGGGGACAGAGTCAAGTAATGGAGATGTTGTTACGTTATCAGCCTCAAGATACAGAAGAAGTATTTGACATCCTGAATCTGCTTGATGATCGACTGAAACAGCCCAACAGTGCTGTGGTGATGGCTTGCATACAGCTGTTTATTCACCTGACTAGAGAGATGAAAGACATAGCTGAGGATGTTTATAAAAGAATTAAAGGGCCTTTGATGACAATTTTATCCTCAAGTAATTCTGAGTTAGTATACGTTTGCTTGTGCCACATAGAACTACTTCTGTCCAAGATGCCAAAGCTATTTGACCGCGAGTATCGCTCATTCTTTTCCAGGCACACTGATCCTTTGTTTATTAAAAGCAAAAAGCTCACGATCTTGACAACAATAGCTTCAGACACAAATTGTGAAGAGATTGTGGCGGAACTGAGCGCACATGTTCATGATGTGGATGTCAAGATGTCAAAGGAAGCAGTTAAGGCCATTGGTGAAATTGCAATGCACCTTCCTCATTCATCAGAGTACTGCATTGATGCTCTTCTGTCCTTTCTCTCCTGGGAAATCGAGTACATTTCATCACAGACACTGGTTGTGATCAGAGATTTGTTGCTGAAGTACGAAAAGTCAGCTATTGCTGTTCTTCCCCAAATTGGAGAATGCCTTGAAATTGTGCAGGACCCTAAAGGATTAGCTGCTATCATCTGGATCATTGGAGAGTATGGACAGTCCATTGTAGACAGTCCCTATCTGCTAGAGCCTCTGATTGACAGAATAGCTTCAGAGCAGTCGGCTGAAGTAAAATTGCAGCTATTGACAGCAACAATGAAACTGTTTTTCAAGAAACCTCCTGAATGTCAACATATGTTAGGCAGACTTCTCAAATTTTGTGTTGATGAAGAGATGCACATGGATGTTCATGACAGAGCTTTGTTTTACTACAGATTGCTCAAGACTGGACCAAAAGAGGCTGAGAGAGTTGTATGTGGTTCAAATACCAAACCTGTTGCAAATCCATGGAACTTAAATGCAAGCTCATCAAATTCAAAGGAATCCCTGTTTGAAGAGTTTAACACACTATCGGTGGTGTATGGGCAATCATCAGTTCATTTCATCACACAAACCATTCCTTACATTAAGGGAAGGCCTTATACAGAACATGCTGCCAGTGATGATGAAATACCACCATGCGAAGAAGAAGAAGTGCTCCAGGCGGATGAAGAAGCTCTTGCATCCTCAGACCGACATGTCGCTGTTGGGAATCTACTGGGTGAAGACATCGGTGTTGAGCAATTTCATGATGACAAAAACCAAGAGGATCATGTCCTTCAGCTAGCAGAAGAACCATCATTGACCCCAGCGCAGTTTGAACAAAGATGGAAATCTCTTCCACAATGCTTTAGATGGGATGAAATGTTGCTGAAAGTTCCTTCCTCAGCTGAAGAACTTCAAGAAAGCTTGAAGAGATACCACATTGCTTTAATGGCCAGCAGCCCTCCAGGGCAATTGATACAAAAGTATTTCTTCTATGCACAACAGAAAGTTTCAGGACAGTGCTTTCTGATTGAAGCTGTCGTTGATGTAAATGCACAACTTCTCAGCATTGTCACAAAATCAGAGGACTCCACACTTGAGGAGGAATTTAGTGAACACCTCAGAAATTGCCTCGAACAGGAGTGGATACAAACCGCAGATTGA

Transcript

FUN_018138-T1

ATATCACTGAGATGGAAACCGAAACATTTTAGACTCGTTTATCTCGCGATTTCTATCTTTCATACTTTTGCGATCTCGTATTGATTCAAAAACAACGATGGAGGTTTTCAAGATGTTGCATCGCAATTTACTCTCTTGAAAAACATTTTCAGAGAGCGGTTAAAAGCCATGTTTTTGAAAGCCAAATCTGTACTAGCAGGCAGCTGATATATCGAAATGTCTACTTCGTCAGGGGGTTTTTTTAGCGAGTCGAATAAAAAAGGTGAAGTGAGTGAATTACAGAAGAACTTGCAATCACCTGAAGTGCAACGAGATGCGAGACAATACAGGAAAGTTGTCCGAAAGGTTATCGCTTACATGACTCTAGGGATGGATGTGTCTCCACTTTTCATGGATATGATCAAGGCTGCAGCTACACATGACCTTGTTCAAAAGAAACTTGTTTATCTCTACATCAGCAGCTATGCTTCTTCTAATCCTGAGTTGGCCTTGTTGACTGTTAATACACTAAGAAAAGATTGCCAGGACAGCAGTGCTATGGTCAGAGGTCTTGCACTTAAAAGCATGTGCTCATTGAGACTCCCTGATCTTGTTGAGTACATAGTTGAACCCCTTCTTGCTGGACTTCAAGACCTCAGCTCTTATGTGCGGCGTTCTGCTGTCATGGGCTGTGTGAAATTGTATCATCTTATTCCTGATTTTGTAGAAGATAATGGCATCATAGAAAAGCTTGTTAGGTTGTTGAGTGACCCTGATCCACAGGTTACTTGTAACTCACTTGTAGCATTGGATGAAATTTTGGCTGCTGAAGGTGGAGTAGTGATGAGAAAGAAAGTTGCTCATAGCTTGCTGAAGAGATTGAGGAGCTTCAGTGGCTGGGGACAGAGTCAAGTAATGGAGATGTTGTTACGTTATCAGCCTCAAGATACAGAAGAAGTATTTGACATCCTGAATCTGCTTGATGATCGACTGAAACAGCCCAACAGTGCTGTGGTGATGGCTTGCATACAGCTGTTTATTCACCTGACTAGAGAGATGAAAGACATAGCTGAGGATGTTTATAAAAGAATTAAAGGGCCTTTGATGACAATTTTATCCTCAAGTAATTCTGAGTTAGTATACGTTTGCTTGTGCCACATAGAACTACTTCTGTCCAAGATGCCAAAGCTATTTGACCGCGAGTATCGCTCATTCTTTTCCAGGCACACTGATCCTTTGTTTATTAAAAGCAAAAAGCTCACGATCTTGACAACAATAGCTTCAGACACAAATTGTGAAGAGATTGTGGCGGAACTGAGCGCACATGTTCATGATGTGGATGTCAAGATGTCAAAGGAAGCAGTTAAGGCCATTGGTGAAATTGCAATGCACCTTCCTCATTCATCAGAGTACTGCATTGATGCTCTTCTGTCCTTTCTCTCCTGGGAAATCGAGTACATTTCATCACAGACACTGGTTGTGATCAGAGATTTGTTGCTGAAGTACGAAAAGTCAGCTATTGCTGTTCTTCCCCAAATTGGAGAATGCCTTGAAATTGTGCAGGACCCTAAAGGATTAGCTGCTATCATCTGGATCATTGGAGAGTATGGACAGTCCATTGTAGACAGTCCCTATCTGCTAGAGCCTCTGATTGACAGAATAGCTTCAGAGCAGTCGGCTGAAGTAAAATTGCAGCTATTGACAGCAACAATGAAACTGTTTTTCAAGAAACCTCCTGAATGTCAACATATGTTAGGCAGACTTCTCAAATTTTGTGTTGATGAAGAGATGCACATGGATGTTCATGACAGAGCTTTGTTTTACTACAGATTGCTCAAGACTGGACCAAAAGAGGCTGAGAGAGTTGTATGTGGTTCAAATACCAAACCTGTTGCAAATCCATGGAACTTAAATGCAAGCTCATCAAATTCAAAGGAATCCCTGTTTGAAGAGTTTAACACACTATCGGTGGTGTATGGGCAATCATCAGTTCATTTCATCACACAAACCATTCCTTACATTAAGGGAAGGCCTTATACAGAACATGCTGCCAGTGATGATGAAATACCACCATGCGAAGAAGAAGAAGTGCTCCAGGCGGATGAAGAAGCTCTTGCATCCTCAGACCGACATGTCGCTGTTGGGAATCTACTGGGTGAAGACATCGGTGTTGAGCAATTTCATGATGACAAAAACCAAGAGGATCATGTCCTTCAGCTAGCAGAAGAACCATCATTGACCCCAGCGCAGTTTGAACAAAGATGGAAATCTCTTCCACAATGCTTTAGATGGGATGAAATGTTGCTGAAAGTTCCTTCCTCAGCTGAAGAACTTCAAGAAAGCTTGAAGAGATACCACATTGCTTTAATGGCCAGCAGCCCTCCAGGGCAATTGATACAAAAGTATTTCTTCTATGCACAACAGAAAGTTTCAGGACAGTGCTTTCTGATTGAAGCTGTCGTTGATGTAAATGCACAACTTCTCAGCATTGTCACAAAATCAGAGGACTCCACACTTGAGGAGGAATTTAGTGAACACCTCAGAAATTGCCTCGAACAGGAGTGGATACAAACCGCAGATTGAAGCAAATGTCAATCCTTAAAATAATACTGACTTTGAGATCCCCCTCTCACTCACTCAGGTTCAGAATATGTTACAATTGAAGAGGAGTGTGGAATAAGGCCTTAAGT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9Y6B7	AP-4 complex subunit beta-1 OS=Homo sapiens OX=9606 GN=AP4B1 PE=1 SV=2
Q9WV76	AP-4 complex subunit beta-1 OS=Mus musculus OX=10090 GN=Ap4b1 PE=1 SV=2
Q9LDK9	Beta-adaptin-like protein A OS=Arabidopsis thaliana OX=3702 GN=BETAA-AD PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004996 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01602 all species →	Adaptin_N	Adaptin N terminal region	Repeat	Interproscan
PF09066 all species →	B2-adapt-app_C	Beta2-adaptin appendage, C-terminal sub-domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR002553 all species →	Domain	Clathrin/coatomer adaptor, adaptin-like, N-terminal	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR015151 all species →	Domain	Beta-adaptin appendage, C-terminal subdomain	Interproscan
IPR012295 all species →	Homologous_superfamily	TBP domain superfamily	Interproscan
IPR016342 all species →	Family	AP-1/2/4 complex subunit beta	Interproscan
IPR026739 all species →	Family	AP complex subunit beta	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11134 all species →	ADAPTOR COMPLEX SUBUNIT BETA FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0016192 all species →	Biological Process	vesicle-mediated transport	Interproscan
GO:0030117 all species →	Cellular Component	membrane coat	Interproscan
GO:0030131 all species →	Cellular Component	clathrin adaptor complex	Interproscan
GO:0015031 all species →	Biological Process	protein transport	Interproscan
GO:0030276 all species →	Molecular Function	clathrin binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12401	AP4B1; AP-4 complex subunit beta-1	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.