Detailed information of FUN_018378-T1 in Siderastrea siderea

Genomic Location: contig_15:11512644...11557499
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF12947
all species →
EGF_3EGF domainDomainInterproscan
PF00041
all species →
fn3Fibronectin type III domainDomainInterproscan
PF01825
all species →
GPSGPCR proteolysis site, GPS, motif MotifInterproscan
PF16489
all species →
GAINGPCR-Autoproteolysis INducing (GAIN) domainDomainInterproscan
PF13385
all species →
Laminin_G_3Concanavalin A-like lectin/glucanases superfamilyDomainInterproscan
PF00002
all species →
7tm_27 transmembrane receptor (Secretin family)FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR013783
all species →
Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR003961
all species →
DomainFibronectin type IIIInterproscan
IPR017983
all species →
Conserved_siteGPCR, family 2, secretin-like, conserved siteInterproscan
IPR001879
all species →
DomainGPCR, family 2, extracellular hormone receptor domainInterproscan
IPR036116
all species →
Homologous_superfamilyFibronectin type III superfamilyInterproscan
IPR024731
all species →
DomainEGF domainInterproscan
IPR013320
all species →
Homologous_superfamilyConcanavalin A-like lectin/glucanase domain superfamilyInterproscan
IPR001881
all species →
DomainEGF-like calcium-binding domainInterproscan
IPR017981
all species →
DomainGPCR, family 2-like, 7TMInterproscan
IPR046338
all species →
Homologous_superfamilyGAIN domain superfamilyInterproscan
IPR048072
all species →
DomainLatrophilin-like receptor, 7TMInterproscan
IPR018097
all species →
Conserved_siteEGF-like calcium-binding, conserved siteInterproscan
IPR000203
all species →
Conserved_siteGPS motifInterproscan
IPR000152
all species →
PTMEGF-type aspartate/asparagine hydroxylation siteInterproscan
IPR000832
all species →
FamilyGPCR, family 2, secretin-likeInterproscan
IPR036445
all species →
Homologous_superfamilyGPCR family 2, extracellular hormone receptor domain superfamilyInterproscan
IPR032471
all species →
DomainGAIN domain, N-terminalInterproscan
IPR000742
all species →
DomainEGF-like domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12011
all species →
ADHESION G-PROTEIN COUPLED RECEPTORInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →
Molecular Functionprotein bindingInterproscan
GO:0004930
all species →
Molecular FunctionG protein-coupled receptor activityInterproscan
GO:0007186
all species →
Biological ProcessG protein-coupled receptor signaling pathwayInterproscan
GO:0016020
all species →
Cellular ComponentmembraneInterproscan
GO:0005509
all species →
Molecular Functioncalcium ion bindingInterproscan
GO:0005887
all species →
Cellular Componentplasma membraneInterproscan
GO:0007189
all species →
Biological Processadenylate cyclase-activating G protein-coupled receptor signaling pathwayInterproscan
GO:0004888
all species →
Molecular Functiontransmembrane signaling receptor activityInterproscan
GO:0007166
all species →
Biological Processcell surface receptor signaling pathwayInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K04593ADGRL2, LPHN2; adhesion G protein-coupled receptor L2-G protein-coupled receptorsko04030deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_018378-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
22TPM > 0
7Conditions
28.8Max TPM
2.8Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 6 3.86 28.84
holobiont · low.pH Control.temp 20 3 2.45 23.81
holobiont · control.pH_high.temp 20 4 2.30 16.64
holobiont · control.pH Control.temp 19 3 1.41 13.41
Whole organism 4 4 6.77 11.06
unannotated 1 1 2.87 2.87
live coral tissue/skeleton 1 1 10.11 10.11

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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