Genomic Location: contig_15:11512644...11557499
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families
| CDS |
| FUN_018378-T2 |
| Transcript |
| FUN_018378-T2 |
| Protein |
| FUN_018378-T2 |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00041 all species → | fn3 | Fibronectin type III domain | Domain | Interproscan |
| PF00002 all species → | 7tm_2 | 7 transmembrane receptor (Secretin family) | Family | Interproscan |
| PF01825 all species → | GPS | GPCR proteolysis site, GPS, motif | Motif | Interproscan |
| PF13385 all species → | Laminin_G_3 | Concanavalin A-like lectin/glucanases superfamily | Domain | Interproscan |
| PF12947 all species → | EGF_3 | EGF domain | Domain | Interproscan |
| PF16489 all species → | GAIN | GPCR-Autoproteolysis INducing (GAIN) domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR003961 all species → | Domain | Fibronectin type III | Interproscan |
| IPR017983 all species → | Conserved_site | GPCR, family 2, secretin-like, conserved site | Interproscan |
| IPR000742 all species → | Domain | EGF-like domain | Interproscan |
| IPR013783 all species → | Homologous_superfamily | Immunoglobulin-like fold | Interproscan |
| IPR000203 all species → | Conserved_site | GPS motif | Interproscan |
| IPR017981 all species → | Domain | GPCR, family 2-like, 7TM | Interproscan |
| IPR036116 all species → | Homologous_superfamily | Fibronectin type III superfamily | Interproscan |
| IPR000832 all species → | Family | GPCR, family 2, secretin-like | Interproscan |
| IPR046338 all species → | Homologous_superfamily | GAIN domain superfamily | Interproscan |
| IPR013320 all species → | Homologous_superfamily | Concanavalin A-like lectin/glucanase domain superfamily | Interproscan |
| IPR001881 all species → | Domain | EGF-like calcium-binding domain | Interproscan |
| IPR024731 all species → | Domain | EGF domain | Interproscan |
| IPR032471 all species → | Domain | GAIN domain, N-terminal | Interproscan |
| IPR000152 all species → | PTM | EGF-type aspartate/asparagine hydroxylation site | Interproscan |
| IPR036445 all species → | Homologous_superfamily | GPCR family 2, extracellular hormone receptor domain superfamily | Interproscan |
| IPR001879 all species → | Domain | GPCR, family 2, extracellular hormone receptor domain | Interproscan |
| IPR018097 all species → | Conserved_site | EGF-like calcium-binding, conserved site | Interproscan |
| IPR048072 all species → | Domain | Latrophilin-like receptor, 7TM | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12011 all species → | ADHESION G-PROTEIN COUPLED RECEPTOR | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0004930 all species → | Molecular Function | G protein-coupled receptor activity | Interproscan |
| GO:0005887 all species → | Cellular Component | plasma membrane | Interproscan |
| GO:0007189 all species → | Biological Process | adenylate cyclase-activating G protein-coupled receptor signaling pathway | Interproscan |
| GO:0007186 all species → | Biological Process | G protein-coupled receptor signaling pathway | Interproscan |
| GO:0004888 all species → | Molecular Function | transmembrane signaling receptor activity | Interproscan |
| GO:0007166 all species → | Biological Process | cell surface receptor signaling pathway | Interproscan |
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| GO:0005509 all species → | Molecular Function | calcium ion binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K04593 | ADGRL2, LPHN2; adhesion G protein-coupled receptor L2 | - | G protein-coupled receptors | ko04030 | deepkoala |
Transcript abundance of FUN_018378-T2 across 85 RNA-seq samples of Siderastrea siderea. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| holobiont · low.pH_high.temp | 20 | 0 | 0.00 | 0.00 | |
| holobiont · low.pH Control.temp | 20 | 0 | 0.00 | 0.00 | |
| holobiont · control.pH_high.temp | 20 | 0 | 0.00 | 0.00 | |
| holobiont · control.pH Control.temp | 19 | 0 | 0.00 | 0.00 | |
| Whole organism | 4 | 0 | 0.00 | 0.00 | |
| unannotated | 1 | 0 | 0.00 | 0.00 | |
| live coral tissue/skeleton | 1 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM,
StringTie quantification over 85 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
