Detailed information of FUN_018474-T2 in Dendrogyra cylindrus

Genomic Location: contig_33:350763...367747
NR annotation: XP_020631199.1, retinoblastoma-like protein 1 [Orbicella faveolata]
Species Dendrogyra cylindrus · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q64701Retinoblastoma-like protein 1 OS=Mus musculus OX=10090 GN=Rbl1 PE=1 SV=3
P28749Retinoblastoma-like protein 1 OS=Homo sapiens OX=9606 GN=RBL1 PE=1 SV=3
D3ZS28Retinoblastoma-like protein 1 OS=Rattus norvegicus OX=10116 GN=Rbl1 PE=1 SV=4
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0004503 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01858
all species →		RB_ARetinoblastoma-associated protein A domainDomainInterproscan
PF01857
all species →		RB_BRetinoblastoma-associated protein B domainDomainInterproscan
PF11934
all species →		DUF3452Domain of unknown function (DUF3452)FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR028309
all species →		FamilyRetinoblastoma protein familyInterproscan
IPR002720
all species →		DomainRetinoblastoma-associated protein, A-boxInterproscan
IPR036915
all species →		Homologous_superfamilyCyclin-like superfamilyInterproscan
IPR002719
all species →		DomainRetinoblastoma-associated protein, B-boxInterproscan
IPR024599
all species →		DomainRetinoblastoma-associated protein, N-terminalInterproscan
IPR013763
all species →		DomainCyclin-like domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13742
all species →		RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000785
all species →		Cellular ComponentchromatinInterproscan
GO:0000977
all species →		Molecular FunctionRNA polymerase II transcription regulatory region sequence-specific DNA bindingInterproscan
GO:0005667
all species →		Cellular Componenttranscription regulator complexInterproscan
GO:0006357
all species →		Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0030154
all species →		Biological Processcell differentiationInterproscan
GO:0051726
all species →		Biological Processregulation of cell cycleInterproscan
GO:2000134
all species →		Biological Processnegative regulation of G1/S transition of mitotic cell cycleInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_018474-T2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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