Gene detail

Detailed information of FUN_018523-T1 in Acropora pulchra

Genomic Location: ptg000012l:10400862...10404932
NR annotation: XP_029182666.2, EH domain-containing protein 3-like [Acropora millepora]
Species abbreviation APULC · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_018523-T1

TAAGGATGACGTCATACTTTGACGACTGCGAGAGACTTTTATGCGCATGCTCTCTTATCCGAACTGTGACACACCTAAGGAAGGCCTGCGAACTCGTGTATGCGAAGTTACTGTGATCCTTTGAAGTCTTCATCTCTGGCCTCAACTAAATCTTCACCATGTTTTCGTGGATGAAAAAGAATGACAGTCAAAGAAATCAAGTTTTCAACTCCGTTGTTGACGGCCTGAGGAAGTTGTATTTTAAGACTTTGAAACCGCTTGAAGAAGCTTACCTTTTCAATGACTTTCATTCACCAGCTATGTCTGATCCTGACTTTGTTGCAAAGCCGATGGTCTTGCTTGTTGGTCAGTATTCCACTGGCAAGACGACCTTCATTCGGTATCTGCTGGAGAGAGAGTTTCCGGGCATACGCATCGGCCCTGAACCTACAACGGATAGCTTCATCGCTGTAATGCATGGGGACAACGAACAGGTCATCCCCGGCAATGCCTTGATTGTAGATCCAAGCAAGCCATTTCGTACTCTGAGTTCATTTGGTAATGCATTTCTGAACAGATTTTGCTGCTCGGAGCTTCCAAGTCCCGTGCTTGAAAGCATAACCATTGTCGACACGCCTGGCATCTTATCGGGGGAAAAGCAAAGTGTCTCTAGAGGATATGACTTCACGGGGATTCTTAAATGGTTCGCGGAACGCTGTGATCGAATAATTCTGCTGTTTGATGCACACAAACTTGACATTTCTGACGAGTTTCAGCGCGGCATCGAGGTGCTTCGCGACTATGATGACAAAATCAGGATCGTCCTCAATAAAGCAGATATGGTGACAACTCAACAGCTTATGCGTGTCTACGGTGCCCTGATGTGGTCTTTGGGGAAAGTCATAAATACGCCCGAAGTCGCTCGTGTCTTTATCGGTTCTTTCTGGAATCAGCCGCTTCAAATTGACGAGAATCGAAAGCTTTTTGAGTACGAAGCTAATGATCTGTTCAATGATATTCAAACCTTGCCAAGGAATGCTGCCTTGCGAAAGTTGAATGATTTTATCAAGAGAGCACGACTAGCGAAGGTTCATGCCTTTGTTATTGCTGAACTGAAAAACCAAATGCCGGCTGTTTTTGGCAAAGATAAGAAGAAGGAACAACTCCTCAAAAATCTTGCTGATGTATACATGAAGATACAGAAAGAGCACAATATTTCGCCTGGGGACTTTCCCCCTGTGCTGAAATTTAAAGAGCAACTGCGCAAGTATGATTTCTCGAAGTTCCATCCCTTGAGACTCAAATTGATTGAGTCACTTGATCGCATGCTGGCCAACGACATTCCTCGTCTAATGGGGATGATACCAGCGGAAGCAGATTCCAATTATGGTGATCAAGCTTCTGTGAAGGGAGGTGCATTTGCGGTTAGCCATTCTACCAATAACCCATTTGCCTCTGGTGCCTGTCAGGGCTTGGCCTTAGGTGCAGAGACAGATAACTGGGTTGTAGAAGAGTTTAAAGAGGAATATGACATATTATTCCAGAGTCTTGGCCCTAAGGGTGGAAAGATCAACGGCGCTGTCGCAAAGAGAGAAATGGTCAAATCAAAACTGCAGAACACAGTGCTGGGGAAAATTTGGACACTATCGGACATTGATCGTGATGGACAGTTAGACAAAGATGAGTTTGCACTGGCTATGTACTTGATTAAGGTCAAATTGGATGATGATGACGATTTACCAGATGAACTTCCAATACATCTCATTCCACCCTCGAAACGAGTTAAAAATGGGATGGATGACTAAACCAATGTGAGACTCATATTCCAAGAATATTGTTCAGTAATGAGGGAATGTTTGAATGTATGGGAATGACAGATATTAATTTTTAATTTTTTTTCTCCTTGTAAGAACCCCACTAGAATTGCTACCAGACTGTGGATCTAAATTGCACTGATTTGCTAGCATGGCAGTCTGCAAACATGCAAATGTCTAATTGTCCACACCTCTTTTGATGCACCTGTTGCAGCCCAGAGAATGTGGTTTTGGGGAAAAAAGTGCATTTTCATCTCAAGAGCTGCATACAGTTAAATTAATCAGTTAAAATAACTTGTTATAACAGTATCCTTATTCCAAATTATTGATTCTGACAAAGCAGCAGTTTGGTTGGCACTGCTAATTATTTTTATGGACACATGGACCATGACAGAGTAAGCTGTAAGAGAACTGAAATTAACTGTTGATTGATGAATCAAAGAATAAATTGCAGGGATTATTTTAAATTCGAAGAAAAACCTGAGTTGGTCATAAAGTATACCCTAACATTTCCTCCACTTTTTGTTTAATTAGTGTAGAGTTCAATCTGATAGTACAGACAAAACTCTACCCTTGGAAACTTGCTTCCATCACAGAGAATATTAGATAACCAGGTGTTCAGTACAATAGGGAAATGATTGTTTTTTTGGTGGGGTTCCAAATTACTGCCATATCCCTGTCTTTTGTTAAAGAACATAACATGACCTCTTGACATTTTCGTTTCTTTTCTAGTTTTTTTTGTTTCCATAGCTCTAAGAAAGTAAGCACATGCCCAAATATTTTCTTTAAAACAGAAAGATAACCTTTAGAAGGTGTGATATTTTTATTAAGGCAGGTAGTGGCTTTAGTTGAAGTGCAAATTAAAATAATGGAAGGATGAACATTTAGCATGTGCAAGGGCAGTCTTTAATTTTTTTTACTTATTAAAGGTACCGAACATATTGCTCAATTCTTTAGTAGTAGCTTTTTGTGAACTGCTATTACACGAGGCTCATTTGCACAGCCATGAATCCTTTTCCAGCAGATTGCAATAACATCCACTGAATTAACACCCATTGGATTTACTCAGGTGTTGTTTCTCCCTTAACTGATGTAAAGTGCTCTTTAATAATTTACCATCACGGAAGGGGAAACAAAAGAGTTCGATATTTGGGATAACTAAAAACCTTAATAATTATTATTATTAAATTTTTTGGATAACATTAATTAATTGTCACCACCTTTCCTGGTACAAAACAAAAAGAAAAATAAGCACATTTATTTGAGTTTGAGAAAGTATTGTATTTTCTGTGGAAATCTTTTGCAGGTGTAGAGGTACTGGTATGTAGAGTATTTTCCAGTTTATCATTATATCACAGAACATTTACTTTTTACCCATTTCGATCATTCACCAGGAGGGTTACCTTTTAGCTGATAATAAAGTGTTATGGTCATAATC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9NZN3	EH domain-containing protein 3 OS=Homo sapiens OX=9606 GN=EHD3 PE=1 SV=2
Q9QXY6	EH domain-containing protein 3 OS=Mus musculus OX=10090 GN=Ehd3 PE=1 SV=2
Q9H4M9	EH domain-containing protein 1 OS=Homo sapiens OX=9606 GN=EHD1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007593 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00350 all species →	Dynamin_N	Dynamin family	Domain	Interproscan
PF18150 all species →	DUF5600	Domain of unknown function (DUF5600)	Domain	Interproscan
PF16880 all species →	EHD_N	N-terminal EH-domain containing protein	Family	Interproscan
PF12763 all species →	EF-hand_4	Cytoskeletal-regulatory complex EF hand	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000261 all species →	Domain	EH domain	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR045063 all species →	Domain	Dynamin, N-terminal	Interproscan
IPR002048 all species →	Domain	EF-hand domain	Interproscan
IPR040990 all species →	Domain	Domain of unknown function DUF5600	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR031692 all species →	Domain	EH domain-containing protein, N-terminal	Interproscan
IPR018247 all species →	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR030381 all species →	Domain	Dynamin-type guanine nucleotide-binding (G) domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11216 all species →	EH DOMAIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006897 all species →	Biological Process	endocytosis	Interproscan
GO:0016197 all species →	Biological Process	endosomal transport	Interproscan
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12476	EHD3; EH domain-containing protein 3	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.