Gene detail

Detailed information of FUN_019105-T1 in Siderastrea siderea

Genomic Location: contig_16:8806562...8817260
NR annotation: no NCBI-NR hit recorded
Species abbreviation SSIDE · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_019105-T1

TTTGACCTCTatcctgggtgccagaggcttttctggCACGCGTATTTTCTAAAATGTGGTCTCGGCCTTCGCGTCCTTCCAAAAATTGCCAGTCCAGTCCAAAGGTTCTCCCTTTTAGGAAAGGGGCTTCGCAACCGTTCTCTCTTGCAGAGGCTCGGTTACTTTGTCATAGTGTTATAGCTCGTTCGAAGTTCGTTTCGTGCATCGATGGTTGTTTGTTCGGTCGAATATTCCGGGCTTGTCTGCTGCGATCAGAAGatCTCATGAACCTGTCATTTGCAGGCTGTGGTTTTCTTGGAGTTTATCACCTTGGAGTCGCAGCCTGTCTTTCGACTCATGCACCTCAGTTTCTCAAGAATGTAACAGCTTTTGCAGGAGCTTCTGCAGGTTCACTAGTTGCTGCAGTGCTAGCAACATCAGCTCCCTTAAACAAGTGTTCTGATTATGTAATTGATCTTACCAATGAGGCTCGCAAACACCCACTGGGACCCTTCAATCCACAGTTTGACTTGGTGGGAAACGTAAGAAAAGGTCTTGAACTTCATCTGCCATCAAATTCACACAAGGTTGCCTCGGGAAGGCTTTTTATTTCTGTAACAAGTTTAAAGGAAAGGAAGAATGTTATCATATCTGAATTTGACTCAAAAGAAGACTTGATACAGGTTTTACTGGCAAGTTGCTACATTCCTTTCTatgccgggctgaaatttccaaaatttaaaGGACAGGCGTGGTATGATGGTGGCTTTACCGACAACTTGCCAATTCCTCCAACGGGATTTACCATTAGAGTTTCGCCATTCAGCGGGAATAGTGAAATCTGCCCGAGGGATCAGTCCCGAATCTTGTCTGAAATGTACTGGAGAAACATGCACGTGTACGTTAacagggaaaacatgcggagaGCTACCAACATTTTGTACCCACCTAGAAAACGGCTACTTGTTAAACTCTATGGAAATGGCTACAACGATGCCTTGCACTACATCAAGAACAACCAGATAAATTAAGCTTTATTCCCACCGGACAGGCTGTATCTGCATACAGTATTTGTTCTCCGGAAAAACTACGGATAGCCTATCGGTGCACGCTTTGTAATAGCTTCGAGAGCAAATCCAGTTTTAGATCTATACTTGTCTCACATCCGTACCACCTTATTGGATTTCTTTGCAGCCTCGTTCTTAGGGTCCTCTTTCTGCATCCCTTGtgtctcgagggaggaagagacaGTACCCTTGGAACGAGACAAATTCATGACATAAGCTTGCGTACCCGAAATGTACCGGTGCAAATCACGTAGTGGATTGTACAGCTGCAGGTATACTTTGGATCCATGCAAGTATTGCCCCAGTACAGTGTGAACATGAAGTCACACAGACAAGTCTATAGGCTGTTTCACGGATCGGAGTGGGCAAGGGTGTCCGCTAATGTATCGGAGGATAACTCGCGGGTCTGCCGATTTCTTGGAGTacataattaagaaataaaggTGCTTACACGTCAACGATAGTGTAGCCTTAGAACTGGGATTGGGGCTTTCTGCAAGACTCGAGGGGCCGCCCCGTCCAAACCCAGCGTAGCCAATCGAACGAATCCGAacgatcaatcaatcgaactcCAACCGTTCGATTGTTTTTCGATTGGTTCGGcaatcgaacataatcgaacaaaaacttttcggtgagttcgatttccgaacttaaTCGAACCAGTCGAACTTAGTCGACGCGAttagttcgatttcgttcggtGGTAAAACAAAACGACATAAACATCGTAAGCACGGTAGTATTAATAGAATCGAATTATAAAGTAGAGAGATTTTCTCTCTTACAACTATGTGATCCAAGTGTAAAATACATAAACACTTTTCAATCAGTCAACTTAAACCTTTATTGTTTTACGAAGTTACATGTAAGAtctaaaaccactgcaaaaaccgtgtacgatcaaccttGCTCAATGTCTgatcagaaagatcgtgatcagtcaaagttgatgaaaatataaatgattttcaaaatgactactgcagggattgaccaaacaacgtgaaaagacgagttacaatatttcgactggacaataccagtcttcatcaggttttaTTGAGGCAGATTacgaatttacagaaatatacatgtagtaaaacaatgatcatgagcggaagttacatatatgacgCGCCGGTGGTATGGCGTGACTACTTAGAAATTATaaagaacaaataaatgaaGTATTTGCTcgcaaataaaatatttatgtcGTTTCCTCGTCGCTACCATAATGTCCGTTATTACTCTGTCACGCAATGTTAAATAAGGGGGTCAATTAttgcaccccctccccccccttctGCACCGTATATAGGAGTCGAATATTTGGCAATCGGTTATATTGTTCTTTGTCTGGAGACGAGCAACACCAAGCTTTCACGTGTCTTTCTTCCTGTCTCCTCCCCATGCCTCTGCCGcatgttttattgttttaattaCTTTATGTAGTTTCTGCGATAGTTGGCCCTCACCTTTACTGGGCTAAAACGGATTAGGAACTGATTGTATTTAactgttgagtttgttgttaaTAACTAGCGGCTATGTGCTTCTTCCATAGCCAAATGATCCCACACGTTACGTTGTAGCTGTAACTGTTACAatccaaaaaaatccttcgagtTTAATAAGCCAGAAAGGTTTATAACCGACAGCATAGAAAATGTATAATGGCGTCTTCGTTAGGAAGTCGGCAAGGGCGACTGGTAGTGGTTTAGTCATTAtcgtaacgttgcttttctgaAGAACGCCACAAGAAGGGCTAAGTTTCCTCTGGCTGCAAAAATACCGCACAGAAGagacaggaaaatgtaagttactttaAATGTTGCGCTTAACCCAACAACACAATATCCTTGTTCACAATTAGGGCAATCATTAAAAGTTGTCATATTTAGGCCAGTAGACGCATTCGTGATTATTTTGCTTTCCACAAGCTACATTTAGAAGAGCTTCTCACCCATTTTAGAAAGAAAGGATGGTAGTTAATTATCAATTAAATTTACGGATAGATAGTAAAAGGAAAACAACCGATAGCTTCTCCTTAGCAAACAGCAAATCGTCCAATTTGTTACGTTCTCGATcctgcctcgttcccaggcgCGTTGTAGCGGATTTTGGATGGGATTGACC

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01734 all species →	Patatin	Patatin-like phospholipase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR033562 all species →	Family	Patatin-like phospholipase domain-containing protein	Interproscan
IPR002641 all species →	Domain	Patatin-like phospholipase domain	Interproscan
IPR016035 all species →	Homologous_superfamily	Acyl transferase/acyl hydrolase/lysophospholipase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12406 all species →	CALCIUM-INDEPENDENT PHOSPHOLIPASE A2 IPLA2 -RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004806 all species →	Molecular Function	triacylglycerol lipase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005811 all species →	Cellular Component	lipid droplet	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0016042 all species →	Biological Process	lipid catabolic process	Interproscan
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan
GO:0019433 all species →	Biological Process	triglyceride catabolic process	Interproscan
GO:0055088 all species →	Biological Process	lipid homeostasis	Interproscan
GO:0006629 all species →	Biological Process	lipid metabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11157	PNPLA4; patatin-like phospholipase domain-containing protein 4	EC:3.1.1.-	Retinol metabolism	ko00830	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.