Detailed information of FUN_019162-T1 in Siderastrea siderea

Genomic Location: contig_16:9620535...9668613
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01111
all species →		CKSCyclin-dependent kinase regulatory subunitDomainInterproscan
PF10192
all species →		GpcrRhopsn4Rhodopsin-like GPCR transmembrane domainFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000789
all species →		FamilyCyclin-dependent kinase, regulatory subunitInterproscan
IPR036858
all species →		Homologous_superfamilyCyclin-dependent kinase, regulatory subunit superfamilyInterproscan
IPR019336
all species →		DomainGPR180/TMEM145, transmembrane domainInterproscan
IPR047831
all species →		FamilyGPR180/TMEM145Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR23252
all species →		INTIMAL THICKNESS RECEPTOR-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0016538
all species →		Molecular Functioncyclin-dependent protein serine/threonine kinase regulator activityInterproscan
GO:0007186
all species →		Biological ProcessG protein-coupled receptor signaling pathwayInterproscan
GO:0019236
all species →		Biological Processresponse to pheromoneInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_019162-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_019162-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
68TPM > 0
7Conditions
727.8Max TPM
246.7Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 15 251.14 727.80
holobiont · low.pH Control.temp 20 15 184.23 563.79
holobiont · control.pH_high.temp 20 18 302.96 583.49
holobiont · control.pH Control.temp 19 14 322.16 722.50
Whole organism 4 4 11.74 16.80
unannotated 1 1 15.62 15.62
live coral tissue/skeleton 1 1 21.72 21.72

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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