Gene detail

Detailed information of FUN_019278-T1 in Dendrogyra cylindrus

Genomic Location: contig_35:381030...397496
NR annotation: CAH3127566.1, unnamed protein product [Pocillopora meandrina]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

FUN_019278-T1

GGTTACAAAGTCAATTTCTTCACGTCTTGGGTTGACACGTACTTTGTGAAGAGAAATTGCTGATTTTCTCGGACCGATTGTGTATTTACGGAGCAAAATAGCTTAAAAATTAAGATGCATTGGTTTACGGGAAGTATTCCTGAAGCCATTGGAAAATCAAGGGAGAAGGGGTTGGTATTCATCGTTTATATTGAAGGGGATAATGAAGATACACAGAAAATGAATGCAACATGGCAAGATCCCAAGGTTTTAGAGACACTATCAAAAGAGAAATGTGTGGCAATTAAACTGGATCATAAGAGTGAGGACTGCGCACAGTTTTCTAAGCTTTACCCTATTGTCTGTATCCCTGCAACATACTTTATTGGCGAGAATGGTTTGCCATTAGAAGTTATAGGTGGAAGCCTTCCAGTTGACGAGTTTCTTACAAAATCAAACAAGGCTTTAGAGACACATCAGAAGTCAGCTGCAAACAATGCTACAGTGCATGCTGCTGCCCGCACTGCACCACAAACCAGtgaggcttcaaactcaacccAGCAGATGTCAGTCAGTAGCCCACCTCAAGAACAGCCAGCATCACCTCAAAGCCATGAAGCCTCGAGTAGAGACACATTGGCCACACCAGGACCATcaaatGAACCAACACGGAATGTTGAACAGGAGATGTCCTTAAATGACAGAGTTGAAAGAGCAAAACAACTTATTGAACAGAAAAGACTCGagaaagaagaaatggaaaatcaaGACgtcaaaaagaaagaatttgacaGGCGTCATCAGGGGCAAGAGCTTAGTAAAGCCAAGCGGGACCGCGAGGAGAGACAGGCACAAGACATTGTAAATCAGATCAAGGAAGACAGAGCTAAAGAGCGAGCCCACAGGGAAGCTGTGAGACAGCAGATTGCAAGGGACAGAGCCGAGCGAGAGGCTAGGAAGCAGAATGAGCTGCAGGAGAGGCAGCGGGCTCAAGCCGCGGCGGCAGCACCTTCAGGTGCCACAACAGGAAGCAGTGAACGGCAGGGGAAAAGCGATTGCACCTCTGCTCGCCTGCAGTTTCGTCTGCCAGATGGCAGTTCTGTGACAAACACTTTTCCAGCTGATTCACCGCTGGAGACCATCAGACAGTATATCATCACTCAACTTGGACCCAGTACCAGGTCGGTGACACTGTACACTACCTACCCCCGGCGGGAGCTGACTGATGAAGATCTGGTGAAGAGCTTGGCCGATTTAGGCTTGGCGCCGAGTTCAACTCTAGTTGTTTCCATGAAAAGCAGCAATGCCATAACGCCATCTGGAAGTTCGTCGTTTACCGAACTGTTGTTGTGGATCCTCACGCCTCTGTTTACACTGATTAATTTCCTGAGGGCCTTTCTATTTGGCAGTCCTGACCAACCTAGAGGAGCTCATAATCCATCTCCGCGCACACCAGACAACACGCCACAACCACAACAACCAAGTTCCGGTGTTCGTAGGAGAGGTCCGGGGGGTGGATCAACAGTGAGGGAACAAGGCGGCGTTTATCGACTTCACAACAgagatgatgaagatgatgacaACAACACATGGAATGGAAACTCCACTCAGCAGATGTAATTTGAAATGATCCAAGATCCCTAAAAATATCAAGAGTATATTAATTATTCTGAATGACGTGTAAAGCAAATCTCGACATCAGCTGCTGCGTCGAAAACATAAAAACACGAAGGATAAAATCAGTAAGACGGGACGTACTTTTaaaagaacaaaatattttcattaacTTGTTTTAATAGTGTACAAGGCGACCGCGTCGTTTGATCTGTAACGCAACACTGCTTCCCTGTGTCACGCAATACTAATGTTCGATTTCCAAACGAAGACATCACCTGTTTCAGTAGTGTTAGTCAGAACACATTCCAATCATGTCTATGGTAAAAAATAGTCACCAAGCTGTTAGTTATGAATTAACCTAAGCTGTGATTCCCCAAGTTGTATAAATCGTTTTGTCATAAACCGGTGCAGGAAGAGAAAACAATGACGAAGACTTCAGtcagagtaaaaaaaaattgattcaaCGTGCTGTTgactccttcgcagacgttcttttggtttgtcacgcaatctttaatGGTTGGCGAGAAAAGATCGCGTGACGAGGCAAAAAAatgtctgcgtaggaggctaactCGCTGTTTGTTGCAGACTACTTTAAAACAAAAAGCCAAGTTACAAGTTACACTGTGGAAATTTCCCCTGTAGCCGGTTTACAAGGAAACCTGGAGAGGgaacaaatcaaatttaaataaaacattttgaGTTCTAATATCATTTGTGCCAATTTACTTATGTGTGGGTTTAACCCATTCAGTGTCAAGACTGCAATAAAGTTCGCATTTTACTGAGGGTTATTTTGTAGGGAAACAAGGAAGGCTTCAATACAGGATTTAAAAAGTGGGAGTCCAAAATTTTCATCAGGCCTGACTCTGTCCC

Protein

Uniprot

Gene family

Uniprot term	Description
Q5HZY0	UBX domain-containing protein 4 OS=Rattus norvegicus OX=10116 GN=Ubxn4 PE=1 SV=1
Q8VCH8	UBX domain-containing protein 4 OS=Mus musculus OX=10090 GN=Ubxn4 PE=1 SV=1
Q5R4I3	UBX domain-containing protein 4 OS=Pongo abelii OX=9601 GN=UBXN4 PE=2 SV=1

Gene family	Subfamily
Ubiquitin Family	ULD\|UFD\|UBX

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00789	UBX	UBX domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029071	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR001012	Domain	UBX domain	Interproscan
IPR036249	Homologous_superfamily	Thioredoxin-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46424	UBX DOMAIN-CONTAINING PROTEIN 4	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005783	Cellular Component	endoplasmic reticulum	Interproscan
GO:0030433	Biological Process	obsolete ubiquitin-dependent ERAD pathway	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K24348	UBXN1_4; UBX domain-containing protein 1/4	-	Protein processing in endoplasmic reticulum	ko04141	deepkoala