Gene detail

Detailed information of FUN_019278-T1 in Siderastrea siderea

Genomic Location: contig_16:11465306...11558508
NR annotation: no NCBI-NR hit recorded
Species abbreviation SSIDE · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_019278-T1

ATGGATTCTGCGGAAAATCAGGACGGCCAGCACTTGATCCAACACTGTGTCATCATCCAACGTGATGAGAAAGGTTATGGCCTGACTGTTACAGGGGACAATCCAGTTTATGTGCAGTCTGTAAAAGAAGGTGGAGCTGCTCACCGTCAAGGTGTGCAAGTTGGTGATAAGATCATCAAgGTGAATGGAACCCTTGTAACACATTACAATCACATTGAAGTTGTCAACCTCATTAAATCTGGTTCCTATGTTGCACTGACACTTCTAGGAAAACCACCGGCTCATCTTCAAGCTGAGAGGCATGGATCTACTTCACCACCAGCAATTATTCCAAAAGATCCAGTGAAGGATGAAAGAACAATGACCATTCAAAGAGTGCTAGATCAAGAAAGACAGTTTTACAAGAAAACAAGGGAGGAGTACATGAGAAAGCCATCAGAAAAACTTCAAAAAGAGCTTGCAGAGTCAACAACTAGAATCAAAGCCTTTGAAGCAGAACTCAATGCCTTAATTCAGACTCAGCAGCCTCTGTCCTCTAACAATGGGCCATTCTCTGCACCCCCTGGTAAAACTACCCCACCTGTGTGGCCGTTAACAGGCCGAATTTCAAACAGGTGTCATTCAGTTCCAGCTGATGACAACCTCAGTCCACCTCTGGATCAAGACCAGAATGTACTGTACGACAACTACCCTCCAGCAGCTGTTACTGGAGAATCCATGGTTAACATGCCGTCTGTGGAGACTGCAGATAAGGAGCCACAGAGACCCTCCTCTCCACCTCAGCCCCCTGAGAGAAAATTCCTTCCCACAGGGGATCAACTTGTGCTTCCTGAAGGGCCAACCCACATAAGGCAGGGCTCCAGTCCAGCAGCTTTCTTTCGTCCTACACCAAATGGCGACTACTCAGATAAGGCTTTTACTGTAAGAGATAATGGCAAGAAAAAGAGCCTAGATGATGTAACAGGAATGTCACGGGCGTACAGCTATTTGGCATCTCCTGTTAAATCACGGAAAAATCTACTGACCTCATCACTTCCACGGGCATGGAACCCACAGAGTTACGAGAACAAAGCAATTCAAATGGATGATGTAAATGGCAAAGTCAACAGGAACAGTTCTCCCCCACCAACACCAACACTGTCAGAACCTATGGAGAAGAGAAGTCGGAGTGACACTGGAGAGATTTACACTGACGGAGACGAAGAATCACCACCTTGTTCCACTGATAATAACAAACTGGGTGCCATACATCATGGCCAGTCTATTAACTCAATCATTTCTATGGAAGATGATGACTTTGCATCAGATGATGAGAAGATAGATGATCATGGTCCATTCAATAGTTTGGACATGCTAAAAAATAAACCAGCTCATCTAGCAGTTTTTCTTCATTACTTAATATCTAACAACGATCCAAGTAGTTTGTTCTTTTGGTTGGTAACAGATTCCTACAAAGAAGGAACACcaaaagaaatgaagaaatggTCTTATGAGATCTACTCCACATTTCTTGCAGAGCGGGCACCTCTGAAAGTTGACATGGATAAAGAAACCATTGTGGAACCCATTGAGAGTTGCCTAGGATCAGAGGAGAATCTGAAGAACTTATTTCAACAAGCAAGAGTCGCTGCAGAAGAGGAAATAGGAGAACTTTTAACAGACTTCAGGAATAAACGGGCCCTTGGCCTTGGAAGTTTGTTTGGGGATCACCAGCTTGAAGATGACGATATGGACAAGGGAAAGGAACTTCAAGTTGTGGAACAAACTCTGATGCCACACTTGGAAAGTGTCCTGGCTGACCTGGATTCCAATACTACTGCTGATGCTTCACAGATTGATAGAAATTCTGCTATGGCATCTGCTCTTACcacatttttaaaacaagttggACTCACCATAAAGcatcaaggaaacaacacaaacatcttggaaagatattcaagttttaCCCGGAAAGAGAACAAACCTCTGTTCAAAATTAAAGCTAGTAAAAAGGTACCTGTGCAAAacttgttgttgctgttatgTGAACTTTTACTCCAGGAAGATGTAGTATAA

Transcript

FUN_019278-T1

TTCCGACACTCTTCTGTTCCGCCACACGCTGTTTTCCACCAAAATCCAAGACGTCTTTCTTAAATGTTTACAGGTTTTTTTGTGCACTTTGCAAGACAACAGGACTTTAGACTTTTCTTTCTGCACCAAGGCTTTCTTGTTAGCGTGTACTTTTtataaactaaacaaaactatGATCTGAGGTAAAACCTTGCGACCGTCCAGACACCCTTCCGCAAtgatccccaagaaaaccaagagaAAAGGTGGAATGAGTAGAGTGACCTGGCGTCCAGCACGATCGGCACTGGTCCACACGTAGTTTTGGTTTAGTCTTGTAGTCTCTTTACCACTCGtagtcttgttttttaaaacactcaCTAGAGAATTTTTTGCATGAAAAAGAGAGTCATGGTTTACAGTCTCATTTCaggataaaaataaacagtcattTGGCAATTCTCGTGAAAAAACGGTGATTCGCGGTTCACGGCTCTGTAACCAAATCACGTTTCACGAGGAAAAAATTTGCCATTTCACAATGcacaggaaataaaaagagcCTTTCACGGATCACGAAAAAACCGTTTACCACCCTCAGGGAAGCTGGAGGTCCTGATCCCTAGGGACTATACGGGTCAGACTAACACGGGACCTGCGGGGTGCCTCATTTGCGGCGTGTTTATCAGGGGCACACAGCTCGACAATACCCGAGCGCCATATTGGTTGTAAGAGGGCTGGAAAATTAGGAGATTTGTTTTGCTCGATCATATTCTCTCGACCGCATATTACGCCAGAGTGAACAAGGCCAAATTATTCTCCACTCAGAAAGGAGTCAGAGGGACCGCTCGGTATCAAAAAGAGTCACTGACATTTTAAGAGAAGTCAAATTTCCTCGGAATACAGAGATATAAAAAGAGAAACAGTACACTGGGACACTACAAAAATTGAAGTGTTTGACGGATCTTCTCTGTGCCCTTGTTGGAACTAACAAGATAATTTGCATGGTTCTCTGGGATTTTCCTGCGATACGATCGATGTATCGACAGTGAAAGAATGAATACCATTCATGTCGTTTACCGCTTCAAGCTGATACTGCAGAAAGGCTGACCCCCTTCGCGAGGGTTTAGACATGGATTCTGCGGAAAATCAGGACGGCCAGCACTTGATCCAACACTGTGTCATCATCCAACGTGATGAGAAAGGTTATGGCCTGACTGTTACAGGGGACAATCCAGTTTATGTGCAGTCTGTAAAAGAAGGTGGAGCTGCTCACCGTCAAGGTGTGCAAGTTGGTGATAAGATCATCAAgGTGAATGGAACCCTTGTAACACATTACAATCACATTGAAGTTGTCAACCTCATTAAATCTGGTTCCTATGTTGCACTGACACTTCTAGGAAAACCACCGGCTCATCTTCAAGCTGAGAGGCATGGATCTACTTCACCACCAGCAATTATTCCAAAAGATCCAGTGAAGGATGAAAGAACAATGACCATTCAAAGAGTGCTAGATCAAGAAAGACAGTTTTACAAGAAAACAAGGGAGGAGTACATGAGAAAGCCATCAGAAAAACTTCAAAAAGAGCTTGCAGAGTCAACAACTAGAATCAAAGCCTTTGAAGCAGAACTCAATGCCTTAATTCAGACTCAGCAGCCTCTGTCCTCTAACAATGGGCCATTCTCTGCACCCCCTGGTAAAACTACCCCACCTGTGTGGCCGTTAACAGGCCGAATTTCAAACAGGTGTCATTCAGTTCCAGCTGATGACAACCTCAGTCCACCTCTGGATCAAGACCAGAATGTACTGTACGACAACTACCCTCCAGCAGCTGTTACTGGAGAATCCATGGTTAACATGCCGTCTGTGGAGACTGCAGATAAGGAGCCACAGAGACCCTCCTCTCCACCTCAGCCCCCTGAGAGAAAATTCCTTCCCACAGGGGATCAACTTGTGCTTCCTGAAGGGCCAACCCACATAAGGCAGGGCTCCAGTCCAGCAGCTTTCTTTCGTCCTACACCAAATGGCGACTACTCAGATAAGGCTTTTACTGTAAGAGATAATGGCAAGAAAAAGAGCCTAGATGATGTAACAGGAATGTCACGGGCGTACAGCTATTTGGCATCTCCTGTTAAATCACGGAAAAATCTACTGACCTCATCACTTCCACGGGCATGGAACCCACAGAGTTACGAGAACAAAGCAATTCAAATGGATGATGTAAATGGCAAAGTCAACAGGAACAGTTCTCCCCCACCAACACCAACACTGTCAGAACCTATGGAGAAGAGAAGTCGGAGTGACACTGGAGAGATTTACACTGACGGAGACGAAGAATCACCACCTTGTTCCACTGATAATAACAAACTGGGTGCCATACATCATGGCCAGTCTATTAACTCAATCATTTCTATGGAAGATGATGACTTTGCATCAGATGATGAGAAGATAGATGATCATGGTCCATTCAATAGTTTGGACATGCTAAAAAATAAACCAGCTCATCTAGCAGTTTTTCTTCATTACTTAATATCTAACAACGATCCAAGTAGTTTGTTCTTTTGGTTGGTAACAGATTCCTACAAAGAAGGAACACcaaaagaaatgaagaaatggTCTTATGAGATCTACTCCACATTTCTTGCAGAGCGGGCACCTCTGAAAGTTGACATGGATAAAGAAACCATTGTGGAACCCATTGAGAGTTGCCTAGGATCAGAGGAGAATCTGAAGAACTTATTTCAACAAGCAAGAGTCGCTGCAGAAGAGGAAATAGGAGAACTTTTAACAGACTTCAGGAATAAACGGGCCCTTGGCCTTGGAAGTTTGTTTGGGGATCACCAGCTTGAAGATGACGATATGGACAAGGGAAAGGAACTTCAAGTTGTGGAACAAACTCTGATGCCACACTTGGAAAGTGTCCTGGCTGACCTGGATTCCAATACTACTGCTGATGCTTCACAGATTGATAGAAATTCTGCTATGGCATCTGCTCTTACcacatttttaaaacaagttggACTCACCATAAAGcatcaaggaaacaacacaaacatcttggaaagatattcaagttttaCCCGGAAAGAGAACAAACCTCTGTTCAAAATTAAAGCTAGTAAAAAGGTACCTGTGCAAAacttgttgttgctgttatgTGAACTTTTACTCCAGGAAGATGTAGTATAATAAAATCGCAAGTGTGGCTTTATAAGAAAGATGAATGTTCatt

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09128 all species →	RGS-like	Regulator of G protein signalling-like domain	Domain	Interproscan
PF00595 all species →	PDZ	PDZ domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036034 all species →	Homologous_superfamily	PDZ superfamily	Interproscan
IPR016137 all species →	Domain	RGS domain	Interproscan
IPR015212 all species →	Domain	Regulator of G protein signalling-like domain	Interproscan
IPR001478 all species →	Domain	PDZ domain	Interproscan
IPR036305 all species →	Homologous_superfamily	RGS domain superfamily	Interproscan
IPR044926 all species →	Homologous_superfamily	RGS, subdomain 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45872 all species →	RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR 2, ISOFORM D	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005085 all species →	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0001664 all species →	Molecular Function	G protein-coupled receptor binding	Interproscan
GO:0007186 all species →	Biological Process	G protein-coupled receptor signaling pathway	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_019278-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.