Detailed information of FUN_019426-T1 in Siderastrea siderea

Genomic Location: contig_17:2174843...2183739
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01704
all species →		UDPGPUTP--glucose-1-phosphate uridylyltransferaseFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR029044
all species →		Homologous_superfamilyNucleotide-diphospho-sugar transferasesInterproscan
IPR002618
all species →		FamilyUDPGP familyInterproscan
IPR039741
all species →		FamilyUDP-sugar pyrophosphorylaseInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11952
all species →		UDP- GLUCOSE PYROPHOSPHORYLASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0070569
all species →		Molecular Functionuridylyltransferase activityInterproscan
GO:0003977
all species →		Molecular FunctionUDP-N-acetylglucosamine diphosphorylase activityInterproscan
GO:0006048
all species →		Biological ProcessUDP-N-acetylglucosamine biosynthetic processInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K00972UAP1; UDP-N-acetylglucosamine/UDP-N-acetylgalactosamine diphosphorylaseEC:2.7.7.23
EC:2.7.7.83
Amino sugar and nucleotide sugar metabolismko00520deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_019426-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
32TPM > 0
7Conditions
335.4Max TPM
50.4Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 8 74.55 335.42
holobiont · low.pH Control.temp 20 2 26.78 320.73
holobiont · control.pH_high.temp 20 9 52.03 250.10
holobiont · control.pH Control.temp 19 7 56.48 260.84
Whole organism 4 4 13.34 17.64
unannotated 1 1 33.52 33.52
live coral tissue/skeleton 1 1 53.77 53.77

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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