Detailed information of FUN_019620-T2 in Siderastrea siderea

Genomic Location: contig_17:5532251...5565517
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF16512
all species →		RhoGAP-FF1p190-A and -B Rho GAPs FF domainDomainInterproscan
PF19518
all species →		RhoGAP_pG1_pG2p190RhoGAP, pG1 and pG2 domainsDomainInterproscan
PF00620
all species →		RhoGAPRhoGAP domainDomainInterproscan
PF00071
all species →		RasRas familyDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036517
all species →		Homologous_superfamilyFF domain superfamilyInterproscan
IPR027417
all species →		Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR002713
all species →		DomainFF domainInterproscan
IPR008936
all species →		Homologous_superfamilyRho GTPase activation proteinInterproscan
IPR051978
all species →		FamilyRho GTPase-activating domain-containing proteinInterproscan
IPR032835
all species →		DomainRho GTPase-activating protein, FF domainInterproscan
IPR045786
all species →		DomainRho GTPase-activating protein, pG1 and pG2 domainInterproscan
IPR000198
all species →		DomainRho GTPase-activating protein domainInterproscan
IPR039007
all species →		DomainRho GTPase-activating protein, pG1 domainInterproscan
IPR001806
all species →		FamilySmall GTPaseInterproscan
IPR039006
all species →		DomainRho GTPase-activating protein, pG2 domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46005
all species →		RHO GTPASE-ACTIVATING PROTEIN 190Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005096
all species →		Molecular FunctionGTPase activator activityInterproscan
GO:0005829
all species →		Cellular ComponentcytosolInterproscan
GO:0007266
all species →		Biological ProcessRho protein signal transductionInterproscan
GO:0008361
all species →		Biological Processregulation of cell sizeInterproscan
GO:0007165
all species →		Biological Processsignal transductionInterproscan
GO:0003924
all species →		Molecular FunctionGTPase activityInterproscan
GO:0005525
all species →		Molecular FunctionGTP bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_019620-T2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_019620-T2 across 85 RNA-seq samples of Siderastrea siderea. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
0TPM > 0
7Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 0 0.00 0.00
holobiont · low.pH Control.temp 20 0 0.00 0.00
holobiont · control.pH_high.temp 20 0 0.00 0.00
holobiont · control.pH Control.temp 19 0 0.00 0.00
Whole organism 4 0 0.00 0.00
unannotated 1 0 0.00 0.00
live coral tissue/skeleton 1 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

TOP