Detailed information of FUN_019727-T1 in Colpophyllia natans

Genomic Location: contig_34:2935579...2938700
NR annotation: KAJ7371439.1, Hyaluronan and proteoglycan link protein 3 [Desmophyllum pertusum]
Species Colpophyllia natans · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q28062Brevican core protein OS=Bos taurus OX=9913 GN=BCAN PE=1 SV=1
Q80WM5Hyaluronan and proteoglycan link protein 3 OS=Mus musculus OX=10090 GN=Hapln3 PE=2 SV=3
P41725Brevican core protein (Fragment) OS=Felis catus OX=9685 GN=BCAN PE=2 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001827 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00024
all species →		PAN_1PAN domainDomainInterproscan
PF00008
all species →		EGFEGF-like domainDomainInterproscan
PF00193
all species →		XlinkExtracellular link domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000538
all species →		DomainLink domainInterproscan
IPR043210
all species →		FamilyCD44 antigen-likeInterproscan
IPR003609
all species →		DomainPAN/Apple domainInterproscan
IPR016186
all species →		Homologous_superfamilyC-type lectin-like/link domain superfamilyInterproscan
IPR000742
all species →		DomainEGF-like domainInterproscan
IPR016187
all species →		Homologous_superfamilyC-type lectin foldInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10225
all species →		HYALURONAN RECEPTORInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005540
all species →		Molecular Functionhyaluronic acid bindingInterproscan
GO:0007155
all species →		Biological Processcell adhesionInterproscan
GO:0004888
all species →		Molecular Functiontransmembrane signaling receptor activityInterproscan
GO:0005886
all species →		Cellular Componentplasma membraneInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_019727-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
TOP