Gene detail

Detailed information of FUN_019845-T1 in Dendrogyra cylindrus

Genomic Location: contig_36:3939990...3946490
NR annotation: XP_020618715.1, retinoid isomerohydrolase-like [Orbicella faveolata]
Species Dendrogyra cylindrus · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_019845-T1

GTGTACGCGTGCGCAAGAAAACGGAGCCGACGCAAAGTCAGATTTTAAGAATCGTGCTCTTGAAGGAAAAAAAGCCGAAAGCAACAGTCCATTACTTAGCGAAGGTTAGAACAGGTTCTTGTTTTACGTTAGTTTATAATTATATGACACTGCATTGAAGGTTTCTGGTTTTGTGTATATAGACAGTTGGctacaaaatgttcaaaataaaaacagGAACGGGGCTAACAAATGCGAAACCCTGCTGCACAAATTTAATGCACTTTGGGGGAATTTTGTAAAGGAAGGTAAGCTCTAATTAGTGCTATTTACTGATGCCCGTTATGGTTACCTGCAGACTTTATTTTCATCACTTCTAACTTCAGTTTCGTTGCGTGTGTGACTGGCATAAAAAGAGGAAAGTTTGCGTGACGCGCTGGTATTACGAACGCCAGCTCACGGCCAGATTAAATATCAGTCGAGGAAGTTGTATGGAACACATTTTTCATCGAGGAAGCGTGTGCTTAACGCAGAAGTTTTTAATATCCAAAGTAAGAACAGTTAAATTAATGTTGTTcttatattattatttaataataacagTGAGAAGACTTTTGTGGTTCAGTACCTGCTGCCTTTTAATTTAATGCTAAAGTTGCTTTCTAATGGTTTTCTCGTCAGTCCGTGGCTGTCTGACCAAAGAGAGGGGATTGCGCGACGATTGAAAAGAACACGACAAACGCAAAAGTTTCAGTAAAAAACTGCGAACGAAGGAAGAAATTTTCTAGGAAAGACTCAATCATGATCGCAGAACAAGACCTTTCTTGCCTGTTCCAGTCAATTGACGAACACCCCGAGCCCGTCAGCGCTGAGATGAAAGGTAACCTCCCCTCCTGGCTGAGCGGCACCTTGATTAGGAATGGGCCTGGTAGGTTTGAGTGCGGCGACACTTCGTTCAATCACTGGTTTGATGGCCAGGGACTTTTGCACCGCTTTCACATAGAGGGCGGTCACGTGACCTACAGCAACAAGTTTGTGCGAAGCGAGAGTTACGCCGACTCTTTGAAACATGGATCATCCAATCATTATGAATTCGGTTCATTCATTCCTCCAGACCCATGCCAGAATATATTCATCCGTTTCTTTTCGCAATTTTTGGGGGATGAACTTTCCATGGACAACACGCCTGTTAACGTGTTTCCAATGAAGGAGAAAATCTACGCAACGACCGAGCGCAACTGCATATTTGAGATCAATCCCGAGACCCTGGACACGTTGAAGAAAGTCAATTTCACCCAGGAGTTTCCAGGTGACACTAGAATCGATTCCGCAACCGCCCACCCTCACCAGACCCCAGACGGCTCAGTGATCAACGTATCTGTCACACATGGCCGAATCTCCACTTACAACGTCATGCAAATACCACCATCCACCGGAAAACTGGACAAAAGTCCTCTAGAGGGCGGTAAAGTGCTTTGTTCTTTCCCACCCACGAGCGGTGTTTCCTATATGCACAGCTTTGGCCTCACAGAGAACTATGTGGTCGTTACCGAAATTCCTCTCGTGCTGAATGTGTGGCAATACTTGACTCGCAGGATCTCTGAGTCGAGTTTTTTTGATTGGCTCTATTGGGATGCAAACCAACTTACCAGATTTCATGTCATCGACAGAAAGGAAGGGAAACGTCTTGGCATCTTCACAGCGGAACCATTTTTTACGTTTCACCACATCAACGCTTTTGAAGAAGATGGCAAGATTTATCTCGATGCTTGTTGCTACCAAGACAGCTCGATTGTCAGTCAGTTCTACCTGCACAATATGCGATCCCCCACAGTGCCAGGCGAACCGAAGCTTGACGTTGCGGATGTACGCCGATACGAGCTTCCTCTTGTGGAAGAATTTGGGGATGTACAGGCAGAGAAACCTCTTCAAAAGGGCGCTGACGGGCTGGATTACACTTTGCTGTACTCTGGATTGGAGTTGCCGAGGTTCAACTACACGGAGAAAAATGGCAAGCCGTATAAGTTCGTGTATGGCGTGAGGGATGTCAACGAAATAATCTTCGGTCAACTTGTCAAGCTGAATGTGGAGACCAAGGAGTTTGTCACATGGCAGGAATCCGGGGGATTTGTTTCGGAACCTGTTTTTGTCAAAGCGCCTGATGGGAAGGACGAAGATGACGGTGTGGTGCTGTCATGCGTTATCAACATCCCTGACCAGACCACCTCTCTGTTGGTGCTGGACGCGAAAGATTTTAAGGAGCTTGGTCGAGCTGTAGTGAAAGGGGTTACTCCAATGACCTTGCATGGCTTGTTCCAGAAAGAGATAAGGCAGTACTGTAGTAATGCGTAGATTGAGGAAATAACTTACGGGCTTTAAAACTGAAACATTTTTCGTTATTAGAACCGGGCGTGAACTTCGCTAAAGTTTATTTGAGGTTTAAACTACTTGTCCTTTCTGCTACTAGAGCTTGGTTTTACAACACCAACAGAAACGTAGAGAAGAATTATTTGCATGAAAATTATAACCGAACAACAAGTAGCTTtaatgttattatttgcatgactaAAAAATACCAGTATAGTATTGCAAAGGTGTACAAGTTAACTGTTTAATTGTGATAACAAATAAACATAATAAAATCTGCAAGACCACTGAGAGACAAACCAATGAGTGGCGCCGGATCTCTTCTAGGCCTGGATCAGTAAGTAAACTAAAAAGATATAAATTTACGGAAAGAGAGAagcaaggaaataggagacgtctgcacgcaggctaacgGCAGACTGATCCAAAGAGATGTAACAAACGCAAAAGAATCgttaaaataaaagtttgaaatAGAATACCTTACAATGCTTGGCTGTTTACGGCTAAGTAACAAATGTCATTCTTTCGTCACGTCTATTTATTCCAAGAGCATACAATGCCGCTTTGTTGATTAAATAGGCTTCGGGGCCTTTCTGACCGAGTCAGGCGAACGTCGTTGATGGTGTGGCCAGGTTGGTTGAAATGTAGTGATATTGGAGCTGAAACACTCTTAGCATAAATGGACTTGACGAAGTACGCCAATGACATTTGTTAATTACTTAGTCGTAAGCAACCAATCATTGTAACgtattttatttcaaacttttaTTTGTAACGATTCCTTTACGTTTGCCACATTTCTTTTCCGCTCAGCGCCTGAGAAAGGTTTGACGGTATTGCAAACCGAAATATCGGGCAATTTTGTTTAACATATTTTAGCTTTTTTTTTCCagaattgtttatttttggTCGCTACGCCGTTTGGATCAGTCTGCCGTAAATTTGTATCAATAAATATAAATACCGGTATATTGAAAACTGCAATTATAACGCAGATAGCATCACAAATGTCATGGTTATTGTTTTACCAAGTAAttgtttttcaaaaatattagttaataattaacttggGTTACACGAGGTAGCCCAGGGGCACTTTGATTTAATATTGAATTGTGAACGATTGCGTGACGAGTGAAATGATTGTCAGCACTGAATGGGAAACATCGAAACACCAGCCGCAAACGttttcaataaagaactgaaaACTCTGGATGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6QT07	Carotenoid-cleaving dioxygenase, mitochondrial OS=Mustela putorius furo OX=9669 GN=BCO2 PE=1 SV=1
O70276	Retinoid isomerohydrolase OS=Rattus norvegicus OX=10116 GN=Rpe65 PE=2 SV=4
Q91ZQ5	Retinoid isomerohydrolase OS=Mus musculus OX=10090 GN=Rpe65 PE=1 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001128 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03055 all species →	RPE65	Retinal pigment epithelial membrane protein	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011047 all species →	Homologous_superfamily	Quinoprotein alcohol dehydrogenase-like superfamily	Interproscan
IPR004294 all species →	Family	Carotenoid oxygenase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10543 all species →	BETA-CAROTENE DIOXYGENASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016702 all species →	Molecular Function	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	Interproscan
GO:0003834 all species →	Molecular Function	beta-carotene 15,15'-dioxygenase activity	Interproscan
GO:0004744 all species →	Molecular Function	obsolete retinal isomerase activity	Interproscan
GO:0010436 all species →	Molecular Function	carotenoid dioxygenase activity	Interproscan
GO:0016121 all species →	Biological Process	carotene catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11158	RPE65; retinoid isomerohydrolase / lutein isomerase	EC:3.1.1.64 EC:5.3.3.22	Retinol metabolism	ko00830	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.