Gene detail

Detailed information of FUN_019958-T1 in Colpophyllia natans

Genomic Location: contig_35:1391953...1404904
NR annotation: XP_020632851.1, uncharacterized protein LOC110069663 isoform X1 [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

FUN_019958-T1

atggcggacgtaGTGATCCGTTTTCGTGGGTTTCGTGTTTTTCTTCCATCTTATTGTAGGGCATGGTCTGGTGTTCGACAGCTAAAAAAAGCTGCAAAGTTGCATAAAGcAGCTATTGGGCAAACAATACTGAAGTTGAATATCAGGGATGAATTTATACCAGTGACCAAAGTGTGTGCTTCCTGTACAAAAATAAGAAACCTGTCTAATCCCTCAAGTATTGCTGTGCAGAGTCAACTTATTACTGCTAAAAGTACTGAAATACAGAAATCTAAGAAATACCAGCCGCTTCACgttATGCCATTTTCTTTAACACAAGGAGGCAAGTGTGTTGCCCATGTGTTGCAGAAACACAAGCCCAAAAGAGCATTAGTGTTTGTGCGAGCTAAGGTTCTAGCTGTGGAACTTGCAAAAGAATTGGAGGAATATGGCCTGAAGTGTTTAGTTCCCAAGAGTGAAGACGAGGCTGCTAATGAGGCTGACTCAGATAGTATCAGTTCAGAGGaagttacatacatgtacagtctgTACCCAGTGACAATGGACAGAGAGACTTTGGACGCAGAGGCAATGGAACGACAGTCAGTGGAGAAATTGTCAACAGACATGCAGCCAAAGGACAGACGGCCTGTGGAAGGAAACTCCACAGACAGACAAATGAGGGATGGTGAAGAGGTTGTGGATGCTGAGCCAGGAATAACTGTGCTGACAGAGGATGATGTGAAGTCCATGGAGGATCTCCTTCCTGTGGATCTCATTGTATTAGTTCAACAGCCCATGTCTGGCCGATCATTTACACTGTTCTGTTTGAAAAAGACCCATGCTAAGGTTAAGCCGCTTGATGtggtgcttctctatgcacacAATGATATTCCCTTCTTAAGAGAGATGCAAACTCATGTTAATGTTAAGAAGCTGGTACCACCTTCGTTCTACGATGTGGCAGTGGTGACTGAGGGTGTGCCGTCAGTTCAAGAGGAGTCCGTGGTGACGCCTGGAAGACGTTTGATAGAACCGCCACCACCTCCGATCACAGCAACCATCCCGCCAAAACCTGTCCCATTTAAAAGGTTTCAACCTCCGGTTCCTGTACCAAGCAAACGACCTGAACGTCATGGGCTGGAGGACCGCGCCCGCATCTATGTTCGTGGTGGGGGTGGTGGCCAAGGTTCACCTAACTTTGGAGGGATGGGAGGAGATGGTGGGGATATAATTGTACAATGTCTTCCATACGGGACTTTAGCTCATTTCACTCTTAAAGAAAACCGACGAATCATAGCAGAACATGGAACCTCGTTCAGGATTGACGAAAAAGGTAGGAAACACCGTGCAATCCGTGGACGGGACGTAGTTATACCAGTCCCTGTTGGAACCACTTTGTCAACAGATGACGGCCGACTTATCGGGGAATTAGAAGAAATAGGGTCCAAGATTGTTGTGGCTAAAGGTGGCCGAGGTGGTTCAGCTGCGACAGTGAACTGGTGCGGAGAGAAGGGCGAGAGAAATATTGTGAGACTGGAGATGAGGCTGCATTCGGATGTTGCTCTGGTTGGGTTTCCAAATGTTGGAAAATCCACCCTTCTCGGTGCTATCAGCAATGCGACTCCAAAAGCAGCCGATTATGCTTTCACAACTATGCGTCCCAGCATTGGAATGGTGGAATATTCTGATCATTCTCAGGTCCGTGTGGCTGACCTTCCAGGGTTAATTGAAGGCGCATCGAACAACAGGGGACTTGGTCACGCTTTTCTCAAGCACACCGAAAAAGCCAAAGCCCTGGTGGACGTTGACGGGTCCATTCTAAgcggtaatattttcattatatggggtgcttttttcgttatgcacggaagttaagtcgttatacgcggtgctatcttcttgcagtgccttttcccgttatatgcggtgcttttctcattatgtgcagtggctaattcattatacgcggtgcttttttcgttatattcacGGGACCTCGTTCTCGCTTGCTTTGCAAAGTAAGCCATTCGGTATTCATAGTAATCTTAAACTAAA

Protein

Uniprot

Uniprot term	Description
Q6DHF7	GTP-binding protein 10 OS=Danio rerio OX=7955 GN=gtpbp10 PE=2 SV=1
A4D1E9	GTP-binding protein 10 OS=Homo sapiens OX=9606 GN=GTPBP10 PE=1 SV=1
Q3MHG6	GTP-binding protein 10 OS=Bos taurus OX=9913 GN=GTPBP10 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01926	MMR_HSR1	50S ribosome-binding GTPase	Family	Interproscan
PF01018	GTP1_OBG	GTP1/OBG	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR045086	Family	OBG-type GTPase	Interproscan
IPR036726	Homologous_superfamily	GTP1/OBG domain superfamily	Interproscan
IPR006169	Domain	GTP1/OBG domain	Interproscan
IPR006073	Domain	GTP binding domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR031167	Domain	OBG-type guanine nucleotide-binding (G) domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11702	DEVELOPMENTALLY REGULATED GTP-BINDING PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003924	Molecular Function	GTPase activity	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K15172	SUPT5H, SPT5; transcription elongation factor SPT5	-	Messenger RNA biogenesis	ko03019	deepkoala